6nwt - Revision history

OCA at 07:01, 11 October 2023

2023-10-11T07:01:08Z

←Older revision		Revision as of 07:01, 11 October 2023
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	<StructureSection load='6nwt' size='340' side='right'caption='[[6nwt]], [[Resolution\|resolution]] 2.35Å' scene=''>		<StructureSection load='6nwt' size='340' side='right'caption='[[6nwt]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6nwt]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NWT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6NWT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6nwt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NWT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=L7P:1,1,1,3,3,3-hexafluoro-2-[2-fluoro-4-({4-[(pyridin-4-yl)methyl]piperazin-1-yl}methyl)[1,1-biphenyl]-4-yl]propan-2-ol'>L7P</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.35Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RORC, NR1F3, RORG, RZRG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=L7P:1,1,1,3,3,3-hexafluoro-2-[2-fluoro-4-({4-[(pyridin-4-yl)methyl]piperazin-1-yl}methyl)[1,1-biphenyl]-4-yl]propan-2-ol'>L7P</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6nwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nwt OCA], [~~http~~://pdbe.org/6nwt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6nwt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6nwt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6nwt ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nwt OCA], [https://pdbe.org/6nwt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nwt RCSB], [https://www.ebi.ac.uk/pdbsum/6nwt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nwt ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN]] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock.	+	[https://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Griffin~~, P R~~]]	+	[[Category: Griffin PR]]
-	[[Category: Park, H]]	+	[[Category: Park H]]
-	[[Category: Strutzenberg~~, T S]]~~	+	[[Category: Strutzenberg TS]]
-	~~[[Category: Chemical probe]]~~	+
-	~~[[Category: Nuclear protein]]~~	+
-	~~[[Category: Orphan nuclear receptor]]~~	+
-	~~[[Category: Synthetic modulator~~]]	+

OCA at 10:37, 4 December 2019

2019-12-04T10:37:10Z

←Older revision		Revision as of 10:37, 4 December 2019
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	<StructureSection load='6nwt' size='340' side='right'caption='[[6nwt]], [[Resolution\|resolution]] 2.35Å' scene=''>		<StructureSection load='6nwt' size='340' side='right'caption='[[6nwt]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6nwt]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NWT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NWT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6nwt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NWT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NWT FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=L7P:1,1,1,3,3,3-hexafluoro-2-[2-fluoro-4-({4-[(pyridin-4-yl)methyl]piperazin-1-yl}methyl)[1,1-biphenyl]-4-yl]propan-2-ol'>L7P</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=L7P:1,1,1,3,3,3-hexafluoro-2-[2-fluoro-4-({4-[(pyridin-4-yl)methyl]piperazin-1-yl}methyl)[1,1-biphenyl]-4-yl]propan-2-ol'>L7P</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RORC, NR1F3, RORG, RZRG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nwt OCA], [http://pdbe.org/6nwt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nwt RCSB], [http://www.ebi.ac.uk/pdbsum/6nwt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nwt ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nwt OCA], [http://pdbe.org/6nwt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nwt RCSB], [http://www.ebi.ac.uk/pdbsum/6nwt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nwt ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Griffin, P R]]		[[Category: Griffin, P R]]

OCA at 05:47, 10 July 2019

2019-07-10T05:47:59Z

←Older revision		Revision as of 05:47, 10 July 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6nwt is ~~ON HOLD until Paper~~ Publication	+	==RORgamma Ligand Binding Domain==
		+	<StructureSection load='6nwt' size='340' side='right'caption='[[6nwt]], [[Resolution\|resolution]] 2.35Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6nwt]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NWT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NWT FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=L7P:1,1,1,3,3,3-hexafluoro-2-[2-fluoro-4-({4-[(pyridin-4-yl)methyl]piperazin-1-yl}methyl)[1,1-biphenyl]-4-yl]propan-2-ol'>L7P</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nwt OCA], [http://pdbe.org/6nwt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nwt RCSB], [http://www.ebi.ac.uk/pdbsum/6nwt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nwt ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RORG_HUMAN RORG_HUMAN]] Possible nuclear receptor for hydroxycholesterols, the binding of which strongly promotes coactivators recruitment. Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes. Involved in lineage specification of uncommitted CD4(+) T-helper cells into Th17 cells. Regulate the expression of several components of the circadian clock.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Members of the nuclear receptor (NR) superfamily regulate both physiological and pathophysiological processes ranging from development and metabolism to inflammation and cancer. Synthetic small molecules targeting NRs are often deployed as therapeutics to correct aberrant NR signaling or as chemical probes to explore the role of the receptor in physiology. Nearly half of NRs do not have specific cognate ligands (termed orphan NRs) and it's unclear if they possess ligand dependent activities. Here we demonstrate that ligand-dependent action of the orphan RORgamma can be defined by selectively disrupting putative endogenous-but not synthetic-ligand binding. Furthermore, the characterization of a library of RORgamma modulators reveals that structural dynamics of the receptor assessed by HDX-MS correlate with activity in biochemical and cell-based assays. These findings, corroborated with X-ray co-crystallography and site-directed mutagenesis, collectively reveal the structural determinants of RORgamma activation, which is critical for designing RORgamma agonists for cancer immunotherapy.

-	~~Authors:~~ Strutzenberg, ~~T.S.~~, ~~Park~~, H., ~~Griffin~~, P.R.	+	HDX-MS reveals structural determinants for RORgamma hyperactivation by synthetic agonists.,Strutzenberg TS, Garcia-Ordonez RD, Novick SJ, Park H, Chang MR, Doebellin C, He Y, Patouret R, Kamenecka TM, Griffin PR Elife. 2019 Jun 7;8. pii: 47172. doi: 10.7554/eLife.47172. PMID:31172947<ref>PMID:31172947</ref>

-	~~Description~~: ~~RORgamma Ligand Binding Domain~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	~~[[Category: Strutzenberg, T.S~~]]	+	<div class="pdbe-citations 6nwt" style="background-color:#fffaf0;"></div>
-	[[Category: Griffin, P.R]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Griffin, P R]]
	[[Category: Park, H]]		[[Category: Park, H]]
		+	[[Category: Strutzenberg, T S]]
		+	[[Category: Chemical probe]]
		+	[[Category: Nuclear protein]]
		+	[[Category: Orphan nuclear receptor]]
		+	[[Category: Synthetic modulator]]

OCA at 13:44, 27 February 2019

2019-02-27T13:44:21Z

←Older revision		Revision as of 13:44, 27 February 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6nwt is ON HOLD	+	The entry 6nwt is ON HOLD until Paper Publication

	Authors: Strutzenberg, T.S., Park, H., Griffin, P.R.		Authors: Strutzenberg, T.S., Park, H., Griffin, P.R.
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	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Strutzenberg, T.S]]		[[Category: Strutzenberg, T.S]]
-	[[Category: Park, H]]
	[[Category: Griffin, P.R]]		[[Category: Griffin, P.R]]
		+	[[Category: Park, H]]

OCA: Protected "6nwt" [edit=sysop:move=sysop]

2019-02-13T07:53:53Z

Protected "6nwt" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:53, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6nwt is ON HOLD Authors: Strutzenberg, T.S., Park, H., Griffin, P.R. Description: RORgamma Ligand Binding Domain [[Category: Unreleased Structures]...

2019-02-13T07:53:52Z

New page: '''Unreleased structure''' The entry 6nwt is ON HOLD Authors: Strutzenberg, T.S., Park, H., Griffin, P.R. Description: RORgamma Ligand Binding Domain [[Category: Unreleased Structures]...

New page

'''Unreleased structure'''

The entry 6nwt is ON HOLD

Authors: Strutzenberg, T.S., Park, H., Griffin, P.R.

Description: RORgamma Ligand Binding Domain
[[Category: Unreleased Structures]]
[[Category: Strutzenberg, T.S]]
[[Category: Park, H]]
[[Category: Griffin, P.R]]