6ob7 - Revision history

OCA at 14:51, 13 March 2024

2024-03-13T14:51:24Z

←Older revision		Revision as of 14:51, 13 March 2024
Line 3:		Line 3:
	<StructureSection load='6ob7' size='340' side='right'caption='[[6ob7]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='6ob7' size='340' side='right'caption='[[6ob7]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ob7]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OB7 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6OB7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ob7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OB7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6OB7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8DZ:(1,4-diazepane-1,4-diyl)di(propane-3,1-diyl)+bis(3,4,5-trimethoxybenzoate)'>8DZ</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ob6\|6ob6]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8DZ:(1,4-diazepane-1,4-diyl)di(propane-3,1-diyl)+bis(3,4,5-trimethoxybenzoate)'>8DZ</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SLC29A1, ENT1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ob7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ob7 OCA], [https://pdbe.org/6ob7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ob7 RCSB], [https://www.ebi.ac.uk/pdbsum/6ob7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ob7 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6ob7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ob7 OCA], [~~http~~://pdbe.org/6ob7 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6ob7 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6ob7 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6ob7 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/S29A1_HUMAN S29A1_HUMAN]] Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. It has a higher affinity for adenosine. Inhibited by dipyridamole and dilazep (anticancer chemotherapeutics drugs).	+	[https://www.uniprot.org/uniprot/S29A1_HUMAN S29A1_HUMAN] Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. It has a higher affinity for adenosine. Inhibited by dipyridamole and dilazep (anticancer chemotherapeutics drugs).
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	The human equilibrative nucleoside transporter 1 (hENT1), a member of the SLC29 family, plays crucial roles in adenosine signaling, cellular uptake of nucleoside for DNA and RNA synthesis, and nucleoside-derived anticancer and antiviral drug transport in humans. Because of its central role in adenosine signaling, it is the target of adenosine reuptake inhibitors (AdoRI), several of which are used clinically. Despite its importance in human physiology and pharmacology, the molecular basis of hENT1-mediated adenosine transport and its inhibition by AdoRIs are limited, owing to the absence of structural information on hENT1. Here, we present crystal structures of hENT1 in complex with two chemically distinct AdoRIs: dilazep and S-(4-nitrobenzyl)-6-thioinosine (NBMPR). Combined with mutagenesis study, our structural analyses elucidate two distinct inhibitory mechanisms exhibited on hENT1 and provide insight into adenosine recognition and transport. Our studies provide a platform for improved pharmacological intervention of adenosine and nucleoside analog drug transport by hENT1.	+
-		+
-	Structures of human ENT1 in complex with adenosine reuptake inhibitors.,Wright NJ, Lee SY Nat Struct Mol Biol. 2019 Jul;26(7):599-606. doi: 10.1038/s41594-019-0245-7. Epub, 2019 Jun 24. PMID:31235912<ref>PMID:31235912</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 6ob7" style="background-color:#fffaf0;"></div>~~	+
-	~~== References ==~~	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Lee, S Y]]	+	[[Category: Lee S-Y]]
-	[[Category: Wright~~, N J]]~~	+	[[Category: Wright NJ]]
-	~~[[Category: Adenosine reuptake inhibitor]]~~	+
-	~~[[Category: Adenosine transport]]~~	+
-	~~[[Category: Dilazep]]~~	+
-	~~[[Category: Ent]]~~	+
-	~~[[Category: Hent1]]~~	+
-	~~[[Category: Nucleoside transport]]~~	+
-	~~[[Category: Nucleoside-drug transport]]~~	+
-	~~[[Category: Slc29]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 11:56, 18 December 2019

2019-12-18T11:56:15Z

←Older revision		Revision as of 11:56, 18 December 2019
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	<table><tr><td colspan='2'>[[6ob7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OB7 FirstGlance]. <br>		<table><tr><td colspan='2'>[[6ob7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OB7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8DZ:(1,4-diazepane-1,4-diyl)di(propane-3,1-diyl)+bis(3,4,5-trimethoxybenzoate)'>8DZ</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8DZ:(1,4-diazepane-1,4-diyl)di(propane-3,1-diyl)+bis(3,4,5-trimethoxybenzoate)'>8DZ</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ob6\|6ob6]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SLC29A1, ENT1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SLC29A1, ENT1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ob7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ob7 OCA], [http://pdbe.org/6ob7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ob7 RCSB], [http://www.ebi.ac.uk/pdbsum/6ob7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ob7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ob7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ob7 OCA], [http://pdbe.org/6ob7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ob7 RCSB], [http://www.ebi.ac.uk/pdbsum/6ob7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ob7 ProSAT]</span></td></tr>

OCA at 06:32, 10 July 2019

2019-07-10T06:32:40Z

←Older revision		Revision as of 06:32, 10 July 2019
Line 3:		Line 3:
	<StructureSection load='6ob7' size='340' side='right'caption='[[6ob7]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='6ob7' size='340' side='right'caption='[[6ob7]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ob7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OB7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ob7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OB7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8DZ:(1,4-diazepane-1,4-diyl)di(propane-3,1-diyl)+bis(3,4,5-trimethoxybenzoate)'>8DZ</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8DZ:(1,4-diazepane-1,4-diyl)di(propane-3,1-diyl)+bis(3,4,5-trimethoxybenzoate)'>8DZ</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SLC29A1, ENT1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ob7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ob7 OCA], [http://pdbe.org/6ob7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ob7 RCSB], [http://www.ebi.ac.uk/pdbsum/6ob7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ob7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ob7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ob7 OCA], [http://pdbe.org/6ob7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ob7 RCSB], [http://www.ebi.ac.uk/pdbsum/6ob7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ob7 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/S29A1_HUMAN S29A1_HUMAN]] Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. It has a higher affinity for adenosine. Inhibited by dipyridamole and dilazep (anticancer chemotherapeutics drugs).		[[http://www.uniprot.org/uniprot/S29A1_HUMAN S29A1_HUMAN]] Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. It has a higher affinity for adenosine. Inhibited by dipyridamole and dilazep (anticancer chemotherapeutics drugs).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The human equilibrative nucleoside transporter 1 (hENT1), a member of the SLC29 family, plays crucial roles in adenosine signaling, cellular uptake of nucleoside for DNA and RNA synthesis, and nucleoside-derived anticancer and antiviral drug transport in humans. Because of its central role in adenosine signaling, it is the target of adenosine reuptake inhibitors (AdoRI), several of which are used clinically. Despite its importance in human physiology and pharmacology, the molecular basis of hENT1-mediated adenosine transport and its inhibition by AdoRIs are limited, owing to the absence of structural information on hENT1. Here, we present crystal structures of hENT1 in complex with two chemically distinct AdoRIs: dilazep and S-(4-nitrobenzyl)-6-thioinosine (NBMPR). Combined with mutagenesis study, our structural analyses elucidate two distinct inhibitory mechanisms exhibited on hENT1 and provide insight into adenosine recognition and transport. Our studies provide a platform for improved pharmacological intervention of adenosine and nucleoside analog drug transport by hENT1.
		+
		+	Structures of human ENT1 in complex with adenosine reuptake inhibitors.,Wright NJ, Lee SY Nat Struct Mol Biol. 2019 Jul;26(7):599-606. doi: 10.1038/s41594-019-0245-7. Epub, 2019 Jun 24. PMID:31235912<ref>PMID:31235912</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6ob7" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Lee, S Y]]		[[Category: Lee, S Y]]

OCA at 05:57, 3 July 2019

2019-07-03T05:57:25Z

←Older revision		Revision as of 05:57, 3 July 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6ob7 is ~~ON HOLD until Paper Publication~~	+	==Human equilibrative nucleoside transporter-1, dilazep bound==
-		+	<StructureSection load='6ob7' size='340' side='right'caption='[[6ob7]], [[Resolution\|resolution]] 2.30Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6ob7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OB7 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8DZ:(1,4-diazepane-1,4-diyl)di(propane-3,1-diyl)+bis(3,4,5-trimethoxybenzoate)'>8DZ</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ob7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ob7 OCA], [http://pdbe.org/6ob7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ob7 RCSB], [http://www.ebi.ac.uk/pdbsum/6ob7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ob7 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/S29A1_HUMAN S29A1_HUMAN]] Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is sodium-independent. It has a higher affinity for adenosine. Inhibited by dipyridamole and dilazep (anticancer chemotherapeutics drugs).
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Lee, S Y]]
		+	[[Category: Wright, N J]]
		+	[[Category: Adenosine reuptake inhibitor]]
		+	[[Category: Adenosine transport]]
		+	[[Category: Dilazep]]
		+	[[Category: Ent]]
		+	[[Category: Hent1]]
		+	[[Category: Nucleoside transport]]
		+	[[Category: Nucleoside-drug transport]]
		+	[[Category: Slc29]]
		+	[[Category: Transport protein]]

OCA at 04:37, 3 April 2019

2019-04-03T04:37:52Z

←Older revision		Revision as of 04:37, 3 April 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ob7 is ON HOLD	+	The entry 6ob7 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6ob7" [edit=sysop:move=sysop]

2019-03-27T05:05:03Z

Protected "6ob7" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:05, 27 March 2019

OCA: New page: '''Unreleased structure''' The entry 6ob7 is ON HOLD Authors: Description: Category: Unreleased Structures

2019-03-27T05:05:02Z

New page: '''Unreleased structure''' The entry 6ob7 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6ob7 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]