6psc - Revision history

OCA at 07:35, 11 October 2023

2023-10-11T07:35:03Z

←Older revision		Revision as of 07:35, 11 October 2023
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	<StructureSection load='6psc' size='340' side='right'caption='[[6psc]], [[Resolution\|resolution]] 3.60Å' scene=''>		<StructureSection load='6psc' size='340' side='right'caption='[[6psc]], [[Resolution\|resolution]] 3.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6psc]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~European_rabbit European rabbit~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PSC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6PSC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6psc]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PSC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PSC FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6psc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6psc OCA], [~~http~~://pdbe.org/6psc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6psc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6psc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6psc ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.6Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6psc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6psc OCA], [https://pdbe.org/6psc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6psc RCSB], [https://www.ebi.ac.uk/pdbsum/6psc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6psc ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 6psc" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6psc" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Antibody 3D structures\|Antibody 3D structures]]
		+	*[[Monoclonal Antibodies 3D structures\|Monoclonal Antibodies 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: European rabbit]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Abskharon, R~~]]	+	[[Category: Oryctolagus cuniculus]]
-	[[Category: ~~Cascio, D~~]]	+	[[Category: Abskharon R]]
-	[[Category: ~~Eisenberg,~~ D S]]	+	[[Category: Cascio D]]
-	[[Category: ~~Sawaya, M R~~]]	+	[[Category: Eisenberg DS]]
-	[[Category: ~~Seidler, P M~~]]	+	[[Category: Sawaya MR]]
-	[[Category: ~~Anti-tau-oligomer scfv antibody]]~~	+	[[Category: Seidler PM]]
-	~~[[Category: Immune system~~]]	+

OCA at 07:00, 25 June 2020

2020-06-25T07:00:06Z

←Older revision		Revision as of 07:00, 25 June 2020
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	==Antibody scFv-M204 trimeric state==		==Antibody scFv-M204 trimeric state==
-	<StructureSection load='6psc' size='340' side='right'caption='[[6psc]]' scene=''>	+	<StructureSection load='6psc' size='340' side='right'caption='[[6psc]], [[Resolution\|resolution]] 3.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PSC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6PSC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6psc]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/European_rabbit European rabbit]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PSC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6PSC FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6psc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6psc OCA], [http://pdbe.org/6psc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6psc RCSB], [http://www.ebi.ac.uk/pdbsum/6psc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6psc ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6psc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6psc OCA], [http://pdbe.org/6psc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6psc RCSB], [http://www.ebi.ac.uk/pdbsum/6psc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6psc ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Soluble oligomers of aggregated tau accompany the accumulation of insoluble amyloid fibrils, a histological hallmark of Alzheimer disease (AD) and two dozen related neurodegenerative diseases. Both oligomers and fibrils seed the spread of tau pathology, and by virtue of their low molecular weight and relative solubility, oligomers may be particularly pernicious seeds. Here, we report the formation of in vitro tau oligomers formed by an ionic liquid (IL15). Using IL15-induced recombinant tau oligomers and a dot blot assay, we discovered a monoclonal antibody (M204) that binds oligomeric tau, but not tau monomers or fibrils. M204 and an engineered single-chain variable-fragment (scFv) inhibited seeding by IL15-induced tau oligomers and pathological extracts from donors with AD and chronic traumatic encephalopathy (CTE). This finding suggests that M204-scFv targets pathological structures that are formed by tau in neurodegenerative diseases. We found that M204-scFv itself partitions into oligomeric forms that inhibit seeding differently, and crystal structures of the M204-scFv monomer, dimer, and trimer revealed conformational differences that explain differences among these forms in binding and inhibition. The efficiency of M204-scFv antibodies to inhibit the seeding by brain tissue extracts from different donors with tauopathies varied among individuals, indicating the possible existence of distinct amyloid polymorphs. We propose that by binding to oligomers, which are hypothesized to be the earliest seeding-competent species, M204-scFv may have potential as an early-stage diagnostic for AD and tauopathies, and also could guide the development of promising therapeutic antibodies.
		+
		+	Crystal structure of a conformational antibody that binds tau oligomers and inhibits pathological seeding by extracts from donors with Alzheimer's disease.,Abskharon R, Seidler PM, Sawaya MR, Cascio D, Yang TP, Philipp S, Williams CK, Newell KL, Ghetti B, DeTure MA, Dickson DW, Vinters HV, Felgner PL, Nakajima R, Glabe CG, Eisenberg DS J Biol Chem. 2020 Jun 3. pii: RA120.013638. doi: 10.1074/jbc.RA120.013638. PMID:32493775<ref>PMID:32493775</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6psc" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: European rabbit]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Abskharon R]]	+	[[Category: Abskharon, R]]
-	[[Category: Cascio D]]	+	[[Category: Cascio, D]]
-	[[Category: Eisenberg DS]]	+	[[Category: Eisenberg, D S]]
-	[[Category: Sawaya MR]]	+	[[Category: Sawaya, M R]]
-	[[Category: Seidler PM]]	+	[[Category: Seidler, P M]]
		+	[[Category: Anti-tau-oligomer scfv antibody]]
		+	[[Category: Immune system]]

OCA at 10:10, 17 June 2020

2020-06-17T10:10:14Z

←Older revision		Revision as of 10:10, 17 June 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6psc ~~is ON HOLD until Paper Publication~~	+	==Antibody scFv-M204 trimeric state==
-		+	<StructureSection load='6psc' size='340' side='right'caption='[[6psc]]' scene=''>
-	~~Authors~~: ~~Abskharon, R~~., ~~Sawaya, M~~.R., ~~Seidler~~, P.M., ~~Cascio, D~~., ~~Eisenberg, D~~.S.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PSC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6PSC FirstGlance]. <br>
-	~~Description: Antibody scFv-M204 trimeric state~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6psc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6psc OCA], [http://pdbe.org/6psc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6psc RCSB], [http://www.ebi.ac.uk/pdbsum/6psc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6psc ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Eisenberg, D.S~~]]	+	__TOC__
-	[[Category: Cascio, D]]	+	</StructureSection>
-	[[Category: ~~Sawaya, M.R~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Abskharon, R~~]]	+	[[Category: Abskharon R]]
-	[[Category: Seidler~~, P.M~~]]	+	[[Category: Cascio D]]
		+	[[Category: Eisenberg DS]]
		+	[[Category: Sawaya MR]]
		+	[[Category: Seidler PM]]

OCA at 07:12, 2 October 2019

2019-10-02T07:12:56Z

←Older revision		Revision as of 07:12, 2 October 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6psc is ON HOLD	+	The entry 6psc is ON HOLD until Paper Publication

	Authors: Abskharon, R., Sawaya, M.R., Seidler, P.M., Cascio, D., Eisenberg, D.S.		Authors: Abskharon, R., Sawaya, M.R., Seidler, P.M., Cascio, D., Eisenberg, D.S.

OCA: Protected "6psc" [edit=sysop:move=sysop]

2019-07-17T09:12:33Z

Protected "6psc" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:12, 17 July 2019

OCA: New page: '''Unreleased structure''' The entry 6psc is ON HOLD Authors: Abskharon, R., Sawaya, M.R., Seidler, P.M., Cascio, D., Eisenberg, D.S. Description: Antibody scFv-M204 trimeric state [[C...

2019-07-17T09:12:31Z

New page: '''Unreleased structure''' The entry 6psc is ON HOLD Authors: Abskharon, R., Sawaya, M.R., Seidler, P.M., Cascio, D., Eisenberg, D.S. Description: Antibody scFv-M204 trimeric state [[C...

New page

'''Unreleased structure'''

The entry 6psc is ON HOLD

Authors: Abskharon, R., Sawaya, M.R., Seidler, P.M., Cascio, D., Eisenberg, D.S.

Description: Antibody scFv-M204 trimeric state
[[Category: Unreleased Structures]]
[[Category: Eisenberg, D.S]]
[[Category: Cascio, D]]
[[Category: Sawaya, M.R]]
[[Category: Abskharon, R]]
[[Category: Seidler, P.M]]