6r46 - Revision history

OCA at 05:51, 13 May 2020

2020-05-13T05:51:07Z

←Older revision		Revision as of 05:51, 13 May 2020
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	<StructureSection load='6r46' size='340' side='right'caption='[[6r46]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='6r46' size='340' side='right'caption='[[6r46]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6r46]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R46 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6R46 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6r46]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Theeb Theeb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R46 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6R46 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">por ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197221 THEEB])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protochlorophyllide_reductase Protochlorophyllide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.33 1.3.1.33] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protochlorophyllide_reductase Protochlorophyllide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.33 1.3.1.33] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6r46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r46 OCA], [http://pdbe.org/6r46 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6r46 RCSB], [http://www.ebi.ac.uk/pdbsum/6r46 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6r46 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6r46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r46 OCA], [http://pdbe.org/6r46 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6r46 RCSB], [http://www.ebi.ac.uk/pdbsum/6r46 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6r46 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/Q8DLC1_THEEB Q8DLC1_THEEB]] Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide).[RuleBase:RU365001]		[[http://www.uniprot.org/uniprot/Q8DLC1_THEEB Q8DLC1_THEEB]] Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide).[RuleBase:RU365001]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The enzyme protochlorophyllide oxidoreductase (POR) catalyses a light-dependent step in chlorophyll biosynthesis that is essential to photosynthesis and, ultimately, all life on Earth(1-3). POR, which is one of three known light-dependent enzymes(4,5), catalyses reduction of the photosensitizer and substrate protochlorophyllide to form the pigment chlorophyllide. Despite its biological importance, the structural basis for POR photocatalysis has remained unknown. Here we report crystal structures of cyanobacterial PORs from Thermosynechococcus elongatus and Synechocystis sp. in their free forms, and in complex with the nicotinamide coenzyme. Our structural models and simulations of the ternary protochlorophyllide-NADPH-POR complex identify multiple interactions in the POR active site that are important for protochlorophyllide binding, photosensitization and photochemical conversion to chlorophyllide. We demonstrate the importance of active-site architecture and protochlorophyllide structure in driving POR photochemistry in experiments using POR variants and protochlorophyllide analogues. These studies reveal how the POR active site facilitates light-driven reduction of protochlorophyllide by localized hydride transfer from NADPH and long-range proton transfer along structurally defined proton-transfer pathways.
		+
		+	Structural basis for enzymatic photocatalysis in chlorophyll biosynthesis.,Zhang S, Heyes DJ, Feng L, Sun W, Johannissen LO, Liu H, Levy CW, Li X, Yang J, Yu X, Lin M, Hardman SJO, Hoeven R, Sakuma M, Hay S, Leys D, Rao Z, Zhou A, Cheng Q, Scrutton NS Nature. 2019 Oct 23. pii: 10.1038/s41586-019-1685-2. doi:, 10.1038/s41586-019-1685-2. PMID:31645759<ref>PMID:31645759</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6r46" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Protochlorophyllide reductase]]		[[Category: Protochlorophyllide reductase]]
		+	[[Category: Theeb]]
	[[Category: Feng, L]]		[[Category: Feng, L]]
	[[Category: Zhou, A]]		[[Category: Zhou, A]]
	[[Category: Complex]]		[[Category: Complex]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 09:08, 30 October 2019

2019-10-30T09:08:19Z

←Older revision		Revision as of 09:08, 30 October 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6r46 is ~~ON HOLD~~	+	==Crystal structure of LPOR (Thermosynechococcus elongatus) complexed with NADP+ at 2.5A resolution==
-		+	<StructureSection load='6r46' size='340' side='right'caption='[[6r46]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~Authors~~: ~~Zhou~~, A., ~~Feng~~, L.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6r46]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R46 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6R46 FirstGlance]. <br>
-	~~Description~~: ~~A NADPH binding protein~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protochlorophyllide_reductase Protochlorophyllide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.33 1.3.1.33] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6r46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r46 OCA], [http://pdbe.org/6r46 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6r46 RCSB], [http://www.ebi.ac.uk/pdbsum/6r46 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6r46 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q8DLC1_THEEB Q8DLC1_THEEB]] Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide).[RuleBase:RU365001]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Protochlorophyllide reductase]]
		+	[[Category: Feng, L]]
	[[Category: Zhou, A]]		[[Category: Zhou, A]]
-	[[Category: ~~Feng, L~~]]	+	[[Category: Complex]]
		+	[[Category: Hydrolase]]

OCA: Protected "6r46" [edit=sysop:move=sysop]

2019-03-27T05:18:11Z

Protected "6r46" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:18, 27 March 2019

OCA: New page: '''Unreleased structure''' The entry 6r46 is ON HOLD Authors: Zhou, A., Feng, L. Description: A NADPH binding protein Category: Unreleased Structures Category: Zhou, A [[Catego...

2019-03-27T05:18:09Z

New page: '''Unreleased structure''' The entry 6r46 is ON HOLD Authors: Zhou, A., Feng, L. Description: A NADPH binding protein Category: Unreleased Structures Category: Zhou, A [[Catego...

New page

'''Unreleased structure'''

The entry 6r46 is ON HOLD

Authors: Zhou, A., Feng, L.

Description: A NADPH binding protein
[[Category: Unreleased Structures]]
[[Category: Zhou, A]]
[[Category: Feng, L]]