6rap - Revision history

OCA at 10:10, 22 May 2024

2024-05-22T10:10:04Z

←Older revision		Revision as of 10:10, 22 May 2024
Line 3:		Line 3:
	<SX load='6rap' size='340' side='right' viewer='molstar' caption='[[6rap]], [[Resolution\|resolution]] 3.30Å' scene=''>		<SX load='6rap' size='340' side='right' viewer='molstar' caption='[[6rap]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rap]] is a 5 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_43705 Atcc 43705~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6RAP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rap]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Serratia_entomophila Serratia entomophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RAP FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>afp1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~42906 ATCC 43705])~~, ~~afp2 (~~[~~http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp3 (~~[~~http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705~~]~~), afp16 ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=42906 ATCC 43705])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.3Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6rap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rap OCA], [~~http~~://pdbe.org/6rap PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6rap RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6rap PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6rap ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rap OCA], [https://pdbe.org/6rap PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rap RCSB], [https://www.ebi.ac.uk/pdbsum/6rap PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rap ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6HAD8_9GAMM Q6HAD8_9GAMM]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 22:
	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: Atcc 43705]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Desfosses, A~~]]	+	[[Category: Serratia entomophila]]
-	[[Category: ~~Afp]]~~	+	[[Category: Desfosses A]]
-	~~[[Category: Anti-feeding prophage]]~~	+
-	~~[[Category: Cap]]~~	+
-	~~[[Category: Contractile]]~~	+
-	~~[[Category: Secretion system]]~~	+
-	~~[[Category: Tube terminating protein]]~~	+
-	~~[[Category: Virus like particle~~]]	+

OCA at 05:27, 11 April 2020

2020-04-11T05:27:36Z

←Older revision		Revision as of 05:27, 11 April 2020
Line 3:		Line 3:
	<SX load='6rap' size='340' side='right' viewer='molstar' caption='[[6rap]], [[Resolution\|resolution]] 3.30Å' scene=''>		<SX load='6rap' size='340' side='right' viewer='molstar' caption='[[6rap]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rap]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAP OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6RAP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rap]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6RAP FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">afp1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp16 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">afp1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp16 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6rap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rap OCA], [http://pdbe.org/6rap PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rap RCSB], [http://www.ebi.ac.uk/pdbsum/6rap PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rap ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6rap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rap OCA], [http://pdbe.org/6rap PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rap RCSB], [http://www.ebi.ac.uk/pdbsum/6rap PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rap ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:08, 7 March 2020

2020-03-07T00:08:50Z

←Older revision		Revision as of 00:08, 7 March 2020
Line 1:		Line 1:

	==Cryo-EM structure of the anti-feeding prophage cap (AFP tube terminating cap)==		==Cryo-EM structure of the anti-feeding prophage cap (AFP tube terminating cap)==
-	<~~StructureSection~~ load='6rap' size='340' side='right'caption='[[6rap]], [[Resolution\|resolution]] 3.30Å' scene=''>	+	<SX load='6rap' size='340' side='right' viewer='molstar' caption='[[6rap]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6rap]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RAP FirstGlance]. <br>		<table><tr><td colspan='2'>[[6rap]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RAP FirstGlance]. <br>
Line 19:		Line 19:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Atcc 43705]]		[[Category: Atcc 43705]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 17:32, 14 August 2019

2019-08-14T17:32:31Z

←Older revision		Revision as of 17:32, 14 August 2019
Line 3:		Line 3:
	<StructureSection load='6rap' size='340' side='right'caption='[[6rap]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='6rap' size='340' side='right'caption='[[6rap]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rap]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RAP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rap]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RAP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rap OCA], [http://pdbe.org/6rap PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rap RCSB], [http://www.ebi.ac.uk/pdbsum/6rap PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rap ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">afp1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp16 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rap OCA], [http://pdbe.org/6rap PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rap RCSB], [http://www.ebi.ac.uk/pdbsum/6rap PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rap ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Contractile injection systems are sophisticated multiprotein nanomachines that puncture target cell membranes. Although the number of atomic-resolution insights into contractile bacteriophage tails, bacterial type six secretion systems and R-pyocins is rapidly increasing, structural information on the contraction of bacterial phage-like protein-translocation structures directed towards eukaryotic hosts is scarce. Here, we characterize the antifeeding prophage AFP from Serratia entomophila by cryo-electron microscopy. We present the high-resolution structure of the entire AFP particle in the extended state, trace 11 protein chains de novo from the apical cap to the needle tip, describe localization variants and perform specific structural comparisons with related systems. We analyse inter-subunit interactions and highlight their universal conservation within contractile injection systems while revealing the specificities of AFP. Furthermore, we provide the structure of the AFP sheath-baseplate complex in a contracted state. This study reveals atomic details of interaction networks that accompany and define the contraction mechanism of toxin-delivery tailocins, offering a comprehensive framework for understanding their mode of action and for their possible adaptation as biocontrol agents.
		+
		+	Atomic structures of an entire contractile injection system in both the extended and contracted states.,Desfosses A, Venugopal H, Joshi T, Felix J, Jessop M, Jeong H, Hyun J, Heymann JB, Hurst MRH, Gutsche I, Mitra AK Nat Microbiol. 2019 Aug 5. pii: 10.1038/s41564-019-0530-6. doi:, 10.1038/s41564-019-0530-6. PMID:31384001<ref>PMID:31384001</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6rap" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 43705]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Desfosses, A]]		[[Category: Desfosses, A]]

OCA: Protected "6rap" [edit=sysop:move=sysop]

2019-04-17T06:14:26Z

Protected "6rap" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:14, 17 April 2019

OCA: New page: ==Cryo-EM structure of the anti-feeding prophage cap (AFP tube terminating cap)== == Structural highlights ==
<table><tr><td colspan='2'>[[6rap]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RAP FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rap OCA], [http://pdbe.org/6rap PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rap RCSB], [http://www.ebi.ac.uk/pdbsum/6rap PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rap ProSAT]</span></td></tr>
</table>
TOC
</StructureSection>
[[Category: Large Structures]]
[[Category: Desfosses, A]]
[[Category: Afp]]
[[Category: Anti-feeding prophage]]
[[Category: Cap]]
[[Category: Contractile]]
[[Category: Secretion system]]
[[Category: Tube terminating protein]]
[[Category: Virus like particle]]