6rbk - Revision history

OCA at 10:10, 22 May 2024

2024-05-22T10:10:11Z

←Older revision		Revision as of 10:10, 22 May 2024
Line 3:		Line 3:
	<SX load='6rbk' size='340' side='right' viewer='molstar' caption='[[6rbk]], [[Resolution\|resolution]] 3.40Å' scene=''>		<SX load='6rbk' size='340' side='right' viewer='molstar' caption='[[6rbk]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rbk]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_43705 Atcc 43705~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RBK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6RBK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rbk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Serratia_entomophila Serratia entomophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RBK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RBK FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>afp7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~42906 ATCC 43705])~~, ~~afp8 (~~[~~http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=42906 ATCC 43705])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.4Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6rbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rbk OCA], [~~http~~://pdbe.org/6rbk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6rbk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6rbk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6rbk ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rbk OCA], [https://pdbe.org/6rbk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rbk RCSB], [https://www.ebi.ac.uk/pdbsum/6rbk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rbk ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6HAD2_9GAMM Q6HAD2_9GAMM]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 22:
	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: Atcc 43705]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Desfosses, A~~]]	+	[[Category: Serratia entomophila]]
-	[[Category: ~~Afp]]~~	+	[[Category: Desfosses A]]
-	~~[[Category: Anti-feeding prophage]]~~	+
-	~~[[Category: Baseplate]]~~	+
-	~~[[Category: Contractile]]~~	+
-	~~[[Category: Secretion system]]~~	+
-	~~[[Category: Virus like particle~~]]	+

OCA at 05:29, 11 April 2020

2020-04-11T05:29:12Z

←Older revision		Revision as of 05:29, 11 April 2020
Line 3:		Line 3:
	<SX load='6rbk' size='340' side='right' viewer='molstar' caption='[[6rbk]], [[Resolution\|resolution]] 3.40Å' scene=''>		<SX load='6rbk' size='340' side='right' viewer='molstar' caption='[[6rbk]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rbk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RBK OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6RBK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rbk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RBK OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6RBK FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">afp7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">afp7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6rbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rbk OCA], [http://pdbe.org/6rbk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rbk RCSB], [http://www.ebi.ac.uk/pdbsum/6rbk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rbk ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6rbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rbk OCA], [http://pdbe.org/6rbk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rbk RCSB], [http://www.ebi.ac.uk/pdbsum/6rbk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rbk ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:15, 7 March 2020

2020-03-07T00:15:37Z

←Older revision		Revision as of 00:15, 7 March 2020
Line 1:		Line 1:

	==Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in extended state, 3-fold symmetrised==		==Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in extended state, 3-fold symmetrised==
-	<~~StructureSection~~ load='6rbk' size='340' side='right'caption='[[6rbk]], [[Resolution\|resolution]] 3.40Å' scene=''>	+	<SX load='6rbk' size='340' side='right' viewer='molstar' caption='[[6rbk]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6rbk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RBK FirstGlance]. <br>		<table><tr><td colspan='2'>[[6rbk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RBK FirstGlance]. <br>
Line 19:		Line 19:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Atcc 43705]]		[[Category: Atcc 43705]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 17:32, 14 August 2019

2019-08-14T17:32:38Z

←Older revision		Revision as of 17:32, 14 August 2019
Line 3:		Line 3:
	<StructureSection load='6rbk' size='340' side='right'caption='[[6rbk]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='6rbk' size='340' side='right'caption='[[6rbk]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rbk]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RBK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rbk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43705 Atcc 43705]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RBK FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rbk OCA], [http://pdbe.org/6rbk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rbk RCSB], [http://www.ebi.ac.uk/pdbsum/6rbk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rbk ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">afp7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705]), afp8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42906 ATCC 43705])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rbk OCA], [http://pdbe.org/6rbk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rbk RCSB], [http://www.ebi.ac.uk/pdbsum/6rbk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rbk ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Contractile injection systems are sophisticated multiprotein nanomachines that puncture target cell membranes. Although the number of atomic-resolution insights into contractile bacteriophage tails, bacterial type six secretion systems and R-pyocins is rapidly increasing, structural information on the contraction of bacterial phage-like protein-translocation structures directed towards eukaryotic hosts is scarce. Here, we characterize the antifeeding prophage AFP from Serratia entomophila by cryo-electron microscopy. We present the high-resolution structure of the entire AFP particle in the extended state, trace 11 protein chains de novo from the apical cap to the needle tip, describe localization variants and perform specific structural comparisons with related systems. We analyse inter-subunit interactions and highlight their universal conservation within contractile injection systems while revealing the specificities of AFP. Furthermore, we provide the structure of the AFP sheath-baseplate complex in a contracted state. This study reveals atomic details of interaction networks that accompany and define the contraction mechanism of toxin-delivery tailocins, offering a comprehensive framework for understanding their mode of action and for their possible adaptation as biocontrol agents.
		+
		+	Atomic structures of an entire contractile injection system in both the extended and contracted states.,Desfosses A, Venugopal H, Joshi T, Felix J, Jessop M, Jeong H, Hyun J, Heymann JB, Hurst MRH, Gutsche I, Mitra AK Nat Microbiol. 2019 Aug 5. pii: 10.1038/s41564-019-0530-6. doi:, 10.1038/s41564-019-0530-6. PMID:31384001<ref>PMID:31384001</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6rbk" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 43705]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Desfosses, A]]		[[Category: Desfosses, A]]

OCA at 07:14, 24 April 2019

2019-04-24T07:14:23Z

←Older revision		Revision as of 07:14, 24 April 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6rbk is ON HOLD~~	+	==Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in extended state, 3-fold symmetrised==
-		+	<StructureSection load='6rbk' size='340' side='right'caption='[[6rbk]], [[Resolution\|resolution]] 3.40Å' scene=''>
-	~~Authors: Desfosses, A.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6rbk]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RBK FirstGlance]. <br>
-	~~Description:~~ Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in extended state, 3-fold symmetrised	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rbk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rbk OCA], [http://pdbe.org/6rbk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rbk RCSB], [http://www.ebi.ac.uk/pdbsum/6rbk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rbk ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Desfosses, A]]		[[Category: Desfosses, A]]
		+	[[Category: Afp]]
		+	[[Category: Anti-feeding prophage]]
		+	[[Category: Baseplate]]
		+	[[Category: Contractile]]
		+	[[Category: Secretion system]]
		+	[[Category: Virus like particle]]

OCA: Protected "6rbk" [edit=sysop:move=sysop]

2019-04-17T04:25:08Z

Protected "6rbk" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:25, 17 April 2019

OCA: New page: '''Unreleased structure''' The entry 6rbk is ON HOLD Authors: Desfosses, A. Description: Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in extended state, 3-fold symmet...

2019-04-17T04:25:07Z

New page: '''Unreleased structure''' The entry 6rbk is ON HOLD Authors: Desfosses, A. Description: Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in extended state, 3-fold symmet...

New page

'''Unreleased structure'''

The entry 6rbk is ON HOLD

Authors: Desfosses, A.

Description: Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in extended state, 3-fold symmetrised
[[Category: Unreleased Structures]]
[[Category: Desfosses, A]]