6rfb - Revision history

OCA at 12:19, 24 January 2024

2024-01-24T12:19:32Z

←Older revision		Revision as of 12:19, 24 January 2024
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	<StructureSection load='6rfb' size='340' side='right'caption='[[6rfb]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='6rfb' size='340' side='right'caption='[[6rfb]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rfb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RFB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6RFB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rfb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dokdonia_eikasta Dokdonia eikasta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RFB FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LFA:EICOSANE'>LFA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6rfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rfb OCA], [~~http~~://pdbe.org/6rfb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6rfb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6rfb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6rfb ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LFA:EICOSANE'>LFA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rfb OCA], [https://pdbe.org/6rfb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rfb RCSB], [https://www.ebi.ac.uk/pdbsum/6rfb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rfb ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/N0DKS8_9FLAO N0DKS8_9FLAO]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6rfb" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6rfb" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Rhodopsin 3D structures\|Rhodopsin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Dokdonia eikasta]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Borshchevskiy, V]]	+	[[Category: Borshchevskiy V]]
-	[[Category: Gordeliy, V]]	+	[[Category: Gordeliy V]]
-	[[Category: Gushchin, I]]	+	[[Category: Gushchin I]]
-	[[Category: Kovalev, K]]	+	[[Category: Kovalev K]]
-	[[Category: Polovinkin, V]]	+	[[Category: Polovinkin V]]
-	~~[[Category: Ion translocation]]~~	+
-	~~[[Category: Light-driven sodium pump]]~~	+
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Retinal]]~~	+
-	~~[[Category: Rhodopsin~~]]	+

OCA: Protected "6rfb" [edit=sysop:move=sysop]

2019-04-24T07:15:52Z

Protected "6rfb" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:15, 24 April 2019

OCA: New page: ==Crystal structure of the potassium-pumping S254A mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.3==
2019-04-24T07:15:50Z

New page: ==Crystal structure of the potassium-pumping S254A mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.3== <StructureSection load='6rfb' size='340' side='right'caption=...

New page

==Crystal structure of the potassium-pumping S254A mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.3==
<StructureSection load='6rfb' size='340' side='right'caption='[[6rfb]], [[Resolution|resolution]] 2.10Å' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6rfb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RFB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RFB FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LFA:EICOSANE'>LFA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rfb OCA], [http://pdbe.org/6rfb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rfb RCSB], [http://www.ebi.ac.uk/pdbsum/6rfb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rfb ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Rhodopsins are the most universal biological light-energy transducers and abundant phototrophic mechanisms that evolved on Earth and have a remarkable diversity and potential for biotechnological applications. Recently, the first sodium-pumping rhodopsin KR2 from Krokinobacter eikastus was discovered and characterized. However, the existing structures of KR2 are contradictory, and the mechanism of Na(+) pumping is not yet understood. Here, we present a structure of the cationic (non H(+)) light-driven pump at physiological pH in its pentameric form. We also present 13 atomic structures and functional data on the KR2 and its mutants, including potassium pumps, which show that oligomerization of the microbial rhodopsin is obligatory for its biological function. The studies reveal the structure of KR2 at nonphysiological low pH where it acts as a proton pump. The structure provides new insights into the mechanisms of microbial rhodopsins and opens the way to a rational design of novel cation pumps for optogenetics.

Structure and mechanisms of sodium-pumping KR2 rhodopsin.,Kovalev K, Polovinkin V, Gushchin I, Alekseev A, Shevchenko V, Borshchevskiy V, Astashkin R, Balandin T, Bratanov D, Vaganova S, Popov A, Chupin V, Buldt G, Bamberg E, Gordeliy V Sci Adv. 2019 Apr 10;5(4):eaav2671. doi: 10.1126/sciadv.aav2671. eCollection 2019, Apr. PMID:30989112<ref>PMID:30989112</ref>

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6rfb" style="background-color:#fffaf0;"></div>
== References ==
<references/>
TOC
</StructureSection>
[[Category: Large Structures]]
[[Category: Borshchevskiy, V]]
[[Category: Gordeliy, V]]
[[Category: Gushchin, I]]
[[Category: Kovalev, K]]
[[Category: Polovinkin, V]]
[[Category: Ion translocation]]
[[Category: Light-driven sodium pump]]
[[Category: Membrane protein]]
[[Category: Retinal]]
[[Category: Rhodopsin]]