6s2c - Revision history

OCA at 10:13, 22 May 2024

2024-05-22T10:13:59Z

←Older revision		Revision as of 10:13, 22 May 2024
Line 3:		Line 3:
	<StructureSection load='6s2c' size='340' side='right'caption='[[6s2c]], [[Resolution\|resolution]] 3.20Å' scene=''>		<StructureSection load='6s2c' size='340' side='right'caption='[[6s2c]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6s2c]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Omono_river_virus~~ Omono ~~river~~ virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S2C OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6S2C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6s2c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Omono_River_virus Omono River virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S2C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6S2C FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6s2c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s2c OCA], [~~http~~://pdbe.org/6s2c PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6s2c RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6s2c PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6s2c ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.2Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6s2c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s2c OCA], [https://pdbe.org/6s2c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6s2c RCSB], [https://www.ebi.ac.uk/pdbsum/6s2c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6s2c ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/E1CI69_9VIRU E1CI69_9VIRU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Omono ~~river~~ virus]]	+	[[Category: Omono River virus]]
-	[[Category: Hajdu, J]]	+	[[Category: Hajdu J]]
-	[[Category: Iwasaki, K]]	+	[[Category: Iwasaki K]]
-	[[Category: Larsson~~, S D.D~~]]	+	[[Category: Larsson SDD]]
-	[[Category: Maia~~, R N.C F~~]]	+	[[Category: Maia RNCF]]
-	[[Category: Miyazaki, N]]	+	[[Category: Miyazaki N]]
-	[[Category: Murata, K]]	+	[[Category: Murata K]]
-	[[Category: Okamoto, K]]	+	[[Category: Okamoto K]]
-	~~[[Category: Capsid]]~~	+
-	~~[[Category: Dsrna]]~~	+
-	~~[[Category: Mosquito]]~~	+
-	~~[[Category: Totiviridae]]~~	+
-	~~[[Category: Totivirus]]~~	+
-	~~[[Category: Totivirus-like virus]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 07:26, 27 May 2020

2020-05-27T07:26:37Z

←Older revision		Revision as of 07:26, 27 May 2020
Line 1:		Line 1:

	==Acquired functional capsid structures in metazoan totivirus-like dsRNA virus.==		==Acquired functional capsid structures in metazoan totivirus-like dsRNA virus.==
-	<StructureSection load='6s2c' size='340' side='right'caption='[[6s2c]]' scene=''>	+	<StructureSection load='6s2c' size='340' side='right'caption='[[6s2c]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S2C OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6S2C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6s2c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Omono_river_virus Omono river virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S2C OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6S2C FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6s2c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s2c OCA], [http://pdbe.org/6s2c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s2c RCSB], [http://www.ebi.ac.uk/pdbsum/6s2c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s2c ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6s2c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s2c OCA], [http://pdbe.org/6s2c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s2c RCSB], [http://www.ebi.ac.uk/pdbsum/6s2c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s2c ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Non-enveloped icosahedral double-stranded RNA (dsRNA) viruses possess multifunctional capsids required for their proliferation. Whereas protozoan/fungal dsRNA viruses have a relatively simple capsid structure, which suffices for the intracellular phase in their life cycle, metazoan dsRNA viruses have acquired additional structural features as an adaptation for extracellular cell-to-cell transmission in multicellular hosts. Here, we present the first atomic model of a metazoan dsRNA totivirus-like virus and the structure reveals three unique structural traits: a C-terminal interlocking arm, surface projecting loops, and an obstruction at the pore on the 5-fold symmetry axis. These traits are keys to understanding the capsid functions of metazoan dsRNA viruses, such as particle stability and formation, cell entry, and endogenous intraparticle transcription of mRNA. On the basis of molecular dynamics simulations of the obstructed pore, we propose a possible mechanism of intraparticle transcription in totivirus-like viruses, which dynamically switches between open and closed states of the pore(s).
		+
		+	Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus.,Okamoto K, Ferreira RJ, Larsson DSD, Maia FRNC, Isawa H, Sawabe K, Murata K, Hajdu J, Iwasaki K, Kasson PM, Miyazaki N Structure. 2020 May 10. pii: S0969-2126(20)30137-4. doi:, 10.1016/j.str.2020.04.016. PMID:32413288<ref>PMID:32413288</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6s2c" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Hajdu J]]	+	[[Category: Omono river virus]]
-	[[Category: Iwasaki K]]	+	[[Category: Hajdu, J]]
-	[[Category: Larsson ~~SDD~~]]	+	[[Category: Iwasaki, K]]
-	[[Category: Maia ~~RNCF~~]]	+	[[Category: Larsson, S D.D]]
-	[[Category: Miyazaki N]]	+	[[Category: Maia, R N.C F]]
-	[[Category: Murata K]]	+	[[Category: Miyazaki, N]]
-	[[Category: Okamoto K]]	+	[[Category: Murata, K]]
		+	[[Category: Okamoto, K]]
		+	[[Category: Capsid]]
		+	[[Category: Dsrna]]
		+	[[Category: Mosquito]]
		+	[[Category: Totiviridae]]
		+	[[Category: Totivirus]]
		+	[[Category: Totivirus-like virus]]
		+	[[Category: Virus]]

OCA at 06:44, 29 April 2020

2020-04-29T06:44:28Z

←Older revision		Revision as of 06:44, 29 April 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6s2c is ~~ON HOLD~~	+	==Acquired functional capsid structures in metazoan totivirus-like dsRNA virus.==
-		+	<StructureSection load='6s2c' size='340' side='right'caption='[[6s2c]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S2C OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6S2C FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6s2c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s2c OCA], [http://pdbe.org/6s2c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s2c RCSB], [http://www.ebi.ac.uk/pdbsum/6s2c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s2c ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Hajdu J]]
		+	[[Category: Iwasaki K]]
		+	[[Category: Larsson SDD]]
		+	[[Category: Maia RNCF]]
		+	[[Category: Miyazaki N]]
		+	[[Category: Murata K]]
		+	[[Category: Okamoto K]]

OCA: Protected "6s2c" [edit=sysop:move=sysop]

2019-06-26T05:31:45Z

Protected "6s2c" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:31, 26 June 2019

OCA: New page: '''Unreleased structure''' The entry 6s2c is ON HOLD Authors: Description: Category: Unreleased Structures

2019-06-26T05:31:44Z

New page: '''Unreleased structure''' The entry 6s2c is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6s2c is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]