6s7n - Revision history

OCA at 12:36, 24 January 2024

2024-01-24T12:36:52Z

←Older revision		Revision as of 12:36, 24 January 2024
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	<StructureSection load='6s7n' size='340' side='right'caption='[[6s7n]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='6s7n' size='340' side='right'caption='[[6s7n]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6s7n]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S7N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6S7N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6s7n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S7N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6S7N FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[6f1m\|6f1m]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6s7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s7n OCA], [https://pdbe.org/6s7n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6s7n RCSB], [https://www.ebi.ac.uk/pdbsum/6s7n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6s7n ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6s7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s7n OCA], [~~http~~://pdbe.org/6s7n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6s7n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6s7n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6s7n ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6s7n" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6s7n" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Camara-Artigas A]]
-	[[Category: Camara-Artigas, A]]	+	[[Category: Plaza-Garrido M]]
-	[[Category: Plaza-Garrido, M]]	+	[[Category: Salinas-Garcia MC]]
-	[[Category: Salinas-Garcia~~, M C]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Low-solvent content~~]]	+

OCA at 15:35, 20 November 2019

2019-11-20T15:35:20Z

←Older revision		Revision as of 15:35, 20 November 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6s7n is ~~ON HOLD~~	+	==Crystal structure of orthorhombic lysozyme grown at pH 5.5 with a 26% of solvent content==
		+	<StructureSection load='6s7n' size='340' side='right'caption='[[6s7n]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6s7n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S7N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S7N FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6f1m\|6f1m]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s7n OCA], [http://pdbe.org/6s7n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s7n RCSB], [http://www.ebi.ac.uk/pdbsum/6s7n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s7n ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A new crystal form of lysozyme with a very low solvent content (26.35%) has been obtained in the orthorhombic space group P212121 (with unit-cell parameters a = 30.04, b = 51.68, c = 61.53 A). The lysozyme structure obtained from these crystals does not show the typical overall fold. Instead, major conformational changes take place in some elements of the secondary structure and in the hydrophobic core of the protein. At the end of the central alpha-helix (alpha2), Glu35 is usually buried in the catalytic site and shows an abnormally high pKa value, which is key to the activity of the enzyme. The high pKa value of this glutamate residue is favoured by the hydrophobic environment, particularly by its neighbour Trp108, which is important for structural stability and saccharide binding. In this new structure, Trp108 shows a 90 degrees rotation of its side chain, which results in the rearrangement of the hydrophobic core. Conformational changes also result in the exposure of Glu35 to the solvent, which impairs the catalytic site by increasing the distance between Glu35 and Asp52 and lowering the pKa value of the glutamate. Altogether, this new lysozyme structure reveals major conformational changes in the hydrophobic core and catalytic site that might play a role in the folding and bactericidal function of the protein.

-	~~Authors: Camara-Artigas, A~~., Plaza-Garrido, M., ~~Salinas~~-~~Garcia~~, M.C.	+	Major conformational changes in the structure of lysozyme obtained from a crystal with a very low solvent content.,Salinas-Garcia MC, Plaza-Garrido M, Alba-Elena D, Camara-Artigas A Acta Crystallogr F Struct Biol Commun. 2019 Nov 1;75(Pt 11):687-696. doi:, 10.1107/S2053230X19013189. Epub 2019 Nov 5. PMID:31702582<ref>PMID:31702582</ref>

-	~~Description: Crystal structure~~ of ~~orthorhombic lysozyme grown at pH 5~~.~~5 with a 26%~~ of ~~solvent content~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Plaza-Garrido, M~~]]	+	<div class="pdbe-citations 6s7n" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
		+	[[Category: Lysozyme]]
	[[Category: Camara-Artigas, A]]		[[Category: Camara-Artigas, A]]
-	[[Category: Salinas-Garcia, M.C]]	+	[[Category: Plaza-Garrido, M]]
		+	[[Category: Salinas-Garcia, M C]]
		+	[[Category: Hydrolase]]
		+	[[Category: Low-solvent content]]

OCA: Protected "6s7n" [edit=sysop:move=sysop]

2019-07-17T09:15:20Z

Protected "6s7n" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:15, 17 July 2019

OCA: New page: '''Unreleased structure''' The entry 6s7n is ON HOLD Authors: Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C. Description: Crystal structure of orthorhombic lysozyme grown ...

2019-07-17T09:15:19Z

New page: '''Unreleased structure''' The entry 6s7n is ON HOLD Authors: Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C. Description: Crystal structure of orthorhombic lysozyme grown ...

New page

'''Unreleased structure'''

The entry 6s7n is ON HOLD

Authors: Camara-Artigas, A., Plaza-Garrido, M., Salinas-Garcia, M.C.

Description: Crystal structure of orthorhombic lysozyme grown at pH 5.5 with a 26% of solvent content
[[Category: Unreleased Structures]]
[[Category: Plaza-Garrido, M]]
[[Category: Camara-Artigas, A]]
[[Category: Salinas-Garcia, M.C]]