OCA at 12:43, 24 January 2024

2024-01-24T12:43:19Z

←Older revision		Revision as of 12:43, 24 January 2024
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	==Legionella effector AnkX in complex with human Rab1b==		==Legionella effector AnkX in complex with human Rab1b==
-	<StructureSection load='6sku' size='340' side='right'caption='[[6sku]]' scene=''>	+	<StructureSection load='6sku' size='340' side='right'caption='[[6sku]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SKU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6SKU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6sku]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6SKU FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6sku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sku OCA], [~~http~~://pdbe.org/6sku PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6sku RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6sku PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6sku ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6sku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sku OCA], [https://pdbe.org/6sku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6sku RCSB], [https://www.ebi.ac.uk/pdbsum/6sku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6sku ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/ANKX_LEGPH ANKX_LEGPH] Virulence effector that plays a role in hijacking the host vesicular trafficking by recruiting the small guanosine triphosphatase (GTPase) Rab1 to the cytosolic face of the Legionella-containing vacuole (LCVs). Acts as a phosphocholine transferase by mediating the addition of phosphocholine to Ser residues of host RAB1 (RAB1A, RAB1B or RAB1C) and RAB35, leading to displacement of GDP dissociation inhibitors (GDI). Phosphocholination of target proteins also impairs accessibility to GTPase effector LepB. Can act on both GDP-bound and GTP-bound Rab proteins.<ref>PMID:18566289</ref> <ref>PMID:22158903</ref> <ref>PMID:21822290</ref> <ref>PMID:22307087</ref> <ref>PMID:22411835</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The causative agent of Legionnaires disease, Legionella pneumophila, translocates the phosphocholine transferase AnkX during infection and thereby posttranslationally modifies the small guanosine triphosphatase (GTPase) Rab1 with a phosphocholine moiety at S76 using cytidine diphosphate (CDP)-choline as a cosubstrate. The molecular basis for Rab1 binding and enzymatic modification have remained elusive because of lack of structural information of the low-affinity complex with AnkX. We combined thiol-reactive CDP-choline derivatives with recombinantly introduced cysteines in the AnkX active site to covalently capture the heterocomplex. The resulting crystal structure revealed that AnkX induces displacement of important regulatory elements of Rab1 by placing a beta sheet into a conserved hydrophobic pocket, thereby permitting phosphocholine transfer to the active and inactive states of the GTPase. Together, the combination of chemical biology and structural analysis reveals the enzymatic mechanism of AnkX and the family of filamentation induced by cyclic adenosine monophosphate (FIC) proteins.
		+
		+	Legionella effector AnkX displaces the switch II region for Rab1b phosphocholination.,Ernst S, Ecker F, Kaspers MS, Ochtrop P, Hedberg C, Groll M, Itzen A Sci Adv. 2020 May 15;6(20):eaaz8041. doi: 10.1126/sciadv.aaz8041. eCollection, 2020 May. PMID:32440549<ref>PMID:32440549</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6sku" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[GTP-binding protein 3D structures\|GTP-binding protein 3D structures]]
		+	*[[Ras-related protein Rab 3D structures\|Ras-related protein Rab 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Legionella pneumophila subsp. pneumophila str. Philadelphia 1]]
	[[Category: Ecker F]]		[[Category: Ecker F]]
	[[Category: Ernst S]]		[[Category: Ernst S]]

OCA at 06:24, 10 June 2020

2020-06-10T06:24:58Z

←Older revision		Revision as of 06:24, 10 June 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6sku is ~~ON HOLD until Paper Publication~~	+	==Legionella effector AnkX in complex with human Rab1b==
-		+	<StructureSection load='6sku' size='340' side='right'caption='[[6sku]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SKU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6SKU FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6sku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sku OCA], [http://pdbe.org/6sku PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6sku RCSB], [http://www.ebi.ac.uk/pdbsum/6sku PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6sku ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Ecker F]]
		+	[[Category: Ernst S]]
		+	[[Category: Groll M]]
		+	[[Category: Hedberg C]]
		+	[[Category: Itzen A]]
		+	[[Category: Kaspers M]]
		+	[[Category: Ochtrop P]]

OCA: Protected "6sku" [edit=sysop:move=sysop]

2019-08-28T13:51:46Z

Protected "6sku" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:51, 28 August 2019

OCA: New page: '''Unreleased structure''' The entry 6sku is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2019-08-28T13:51:45Z

New page: '''Unreleased structure''' The entry 6sku is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6sku is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]

6sku - Revision history

OCA at 12:43, 24 January 2024

OCA at 06:24, 10 June 2020

OCA: Protected "6sku" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 6sku is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures