6tv0 - Revision history

OCA at 13:10, 24 January 2024

2024-01-24T13:10:06Z

←Older revision		Revision as of 13:10, 24 January 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6tv0]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Serratia_sp. Serratia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TV0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6TV0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[6tv0]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Serratia_sp. Serratia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TV0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6TV0 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~, ~~<scene name='pdbligand=OXD:OXALIC+ACID'>OXD</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.96Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https:~~/~~/en.wikipedia.org/wiki/Cyanase Cyanase]~~, ~~with EC number [https~~:~~//www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.104 4.2.1.104]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=OXD:OXALIC+ACID'>OXD</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6tv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6tv0 OCA], [https://pdbe.org/6tv0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6tv0 RCSB], [https://www.ebi.ac.uk/pdbsum/6tv0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6tv0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6tv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6tv0 OCA], [https://pdbe.org/6tv0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6tv0 RCSB], [https://www.ebi.ac.uk/pdbsum/6tv0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6tv0 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A7G2JL56_9GAMM A0A7G2JL56_9GAMM] Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide.[ARBA:ARBA00003561][HAMAP-Rule:MF_00535]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cyanase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Serratia sp]]		[[Category: Serratia sp]]
-	[[Category: Bolognesi, M]]	+	[[Category: Bolognesi M]]
-	[[Category: Chaves-Sanjuan, A]]	+	[[Category: Chaves-Sanjuan A]]
-	[[Category: Gourlay~~, L J~~]]	+	[[Category: Gourlay LJ]]
-	[[Category: Pederzoli, R]]	+	[[Category: Pederzoli R]]
-	[[Category: Tarantino, D]]	+	[[Category: Tarantino D]]
-	~~[[Category: Enzyme]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Lyase~~]]	+

OCA at 07:29, 9 February 2022

2022-02-09T07:29:22Z

←Older revision		Revision as of 07:29, 9 February 2022
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	==Serratia spp. cyanase hydratase==		==Serratia spp. cyanase hydratase==
-	<StructureSection load='6tv0' size='340' side='right'caption='[[6tv0]]' scene=''>	+	<StructureSection load='6tv0' size='340' side='right'caption='[[6tv0]], [[Resolution\|resolution]] 1.96Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TV0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6TV0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6tv0]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Serratia_sp. Serratia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TV0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6TV0 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6tv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6tv0 OCA], [https://pdbe.org/6tv0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6tv0 RCSB], [https://www.ebi.ac.uk/pdbsum/6tv0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6tv0 ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=OXD:OXALIC+ACID'>OXD</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cyanase Cyanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.104 4.2.1.104] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6tv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6tv0 OCA], [https://pdbe.org/6tv0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6tv0 RCSB], [https://www.ebi.ac.uk/pdbsum/6tv0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6tv0 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The unintentional crystallization of contaminant proteins in the place of target recombinant proteins is sporadically reported, despite the availability of stringent expression/purification protocols and of software for the detection of contaminants. Typically, the contaminant protein originates from the expression organism (for example Escherichia coli), but in rare circumstances contaminants from different sources have been reported. Here, a case of contamination from a Serratia bacterial strain that occurred while attempting to crystallize an unrelated protein from Burkholderia pseudomallei (overexpressed in E. coli) is presented. The contamination led to the unintended crystallization and structure analysis of a cyanase hydratase from a bacterial strain of the Serratia genus, an opportunistic enterobacterium that grows under conditions similar to those of E. coli and that is found in a variety of habitats, including the laboratory environment. In this context, the procedures that were adopted to identify the contaminant based on crystallographic data only are presented and the crystal structure of Serrata spp. cyanase hydratase is briefly discussed.
		+
		+	Detecting the nature and solving the crystal structure of a contaminant protein from an opportunistic pathogen.,Pederzoli R, Tarantino D, Gourlay LJ, Chaves-Sanjuan A, Bolognesi M Acta Crystallogr F Struct Biol Commun. 2020 Sep 1;76(Pt 9):392-397. doi:, 10.1107/S2053230X20010626. Epub 2020 Aug 28. PMID:32880586<ref>PMID:32880586</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6tv0" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Cyanase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bolognesi M]]	+	[[Category: Serratia sp]]
-	[[Category: Chaves-Sanjuan A]]	+	[[Category: Bolognesi, M]]
-	[[Category: Gourlay LJ]]	+	[[Category: Chaves-Sanjuan, A]]
-	[[Category: Pederzoli R]]	+	[[Category: Gourlay, L J]]
-	[[Category: Tarantino D]]	+	[[Category: Pederzoli, R]]
		+	[[Category: Tarantino, D]]
		+	[[Category: Enzyme]]
		+	[[Category: Hydrolase]]
		+	[[Category: Lyase]]

OCA at 07:53, 27 January 2021

2021-01-27T07:53:23Z

←Older revision		Revision as of 07:53, 27 January 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 6tv0 is ~~ON HOLD until Paper Publication~~	+	==Serratia spp. cyanase hydratase==
-		+	<StructureSection load='6tv0' size='340' side='right'caption='[[6tv0]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TV0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6TV0 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6tv0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6tv0 OCA], [https://pdbe.org/6tv0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6tv0 RCSB], [https://www.ebi.ac.uk/pdbsum/6tv0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6tv0 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Bolognesi M]]
		+	[[Category: Chaves-Sanjuan A]]
		+	[[Category: Gourlay LJ]]
		+	[[Category: Pederzoli R]]
		+	[[Category: Tarantino D]]

OCA: Protected "6tv0" [edit=sysop:move=sysop]

2020-01-22T13:56:35Z

Protected "6tv0" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:56, 22 January 2020

OCA: New page: '''Unreleased structure''' The entry 6tv0 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2020-01-22T13:56:32Z

New page: '''Unreleased structure''' The entry 6tv0 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6tv0 is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]