6uuv - Revision history

OCA at 07:58, 11 October 2023

2023-10-11T07:58:53Z

←Older revision		Revision as of 07:58, 11 October 2023
Line 3:		Line 3:
	<StructureSection load='6uuv' size='340' side='right'caption='[[6uuv]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6uuv' size='340' side='right'caption='[[6uuv]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6uuv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Aciba Aciba~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UUV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UUV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6uuv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UUV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UUV FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">fabG_6, fabG, fabG_28, fabG_3, AB719_16670, CEJ63_16090, EJB02_12225, SAMEA104305229_01073, SAMEA104305325_01586, SAMEA104305337_09390 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id~~=470 ACIBA])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/3-oxoacyl~~-[~~acyl-carrier-protein]_reductase 3-oxoacyl-~~[~~acyl-carrier-protein~~] ~~reductase~~]~~, with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=~~1.~~1.1.100 1.1.1.100] </span>~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uuv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uuv OCA], [https://pdbe.org/6uuv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uuv RCSB], [https://www.ebi.ac.uk/pdbsum/6uuv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uuv ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uuv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uuv OCA], [https://pdbe.org/6uuv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uuv RCSB], [https://www.ebi.ac.uk/pdbsum/6uuv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uuv ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A219C8F5_ACIBA A0A219C8F5_ACIBA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aciba~~]]	+	[[Category: Acinetobacter baumannii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Cross~~, E M~~]]	+	[[Category: Cross EM]]
-	[[Category: Forwood~~, J K]]~~	+	[[Category: Forwood JK]]
-	~~[[Category: 3-oxoacyl-acp]]~~	+
-	~~[[Category: Fabg]]~~	+
-	~~[[Category: Hmw]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Reductase~~]]	+

OCA at 07:42, 25 June 2021

2021-06-25T07:42:23Z

←Older revision		Revision as of 07:42, 25 June 2021
Line 3:		Line 3:
	<StructureSection load='6uuv' size='340' side='right'caption='[[6uuv]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6uuv' size='340' side='right'caption='[[6uuv]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6uuv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UUV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6UUV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6uuv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aciba Aciba]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UUV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UUV FirstGlance]. <br>
-	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/3-oxoacyl-[acyl-carrier-protein]_reductase 3-oxoacyl-[acyl-carrier-protein] reductase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.100 1.1.1.100] </span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fabG_6, fabG, fabG_28, fabG_3, AB719_16670, CEJ63_16090, EJB02_12225, SAMEA104305229_01073, SAMEA104305325_01586, SAMEA104305337_09390 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=470 ACIBA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6uuv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uuv OCA], [~~http~~://pdbe.org/6uuv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6uuv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6uuv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6uuv ProSAT]</span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/3-oxoacyl-[acyl-carrier-protein]_reductase 3-oxoacyl-[acyl-carrier-protein] reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.100 1.1.1.100] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uuv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uuv OCA], [https://pdbe.org/6uuv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uuv RCSB], [https://www.ebi.ac.uk/pdbsum/6uuv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uuv ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Treatments for 'superbug' infections are the focus for innovative research, as drug resistance threatens human health and medical practices globally. In particular, Acinetobacter baumannii (Ab) infections are repeatedly reported as difficult to treat due to increasing antibiotic resistance. Therefore, there is increasing need to identify novel targets in the development of different antimicrobials. Of particular interest is fatty acid synthesis, vital for the formation of phospholipids, lipopolysaccharides/lipooligosaccharides, and lipoproteins of Gram-negative envelopes. The bacterial type II fatty acid synthesis (FASII) pathway is an attractive target for the development of inhibitors and is particularly favourable due to the differences from mammalian type I fatty acid synthesis. Discrete enzymes in this pathway include two reductase enzymes: 3-oxoacyl-acyl carrier protein (ACP) reductase (FabG) and enoyl-ACP reductase (FabI). Here, we investigate annotated FabG homologs, finding a low-molecular weight 3-oxoacyl-ACP reductase, as the most likely FASII FabG candidate, and high-molecular weight 3-oxoacyl-ACP reductase (HMwFabG), showing differences in structure and coenzyme preference. To date, this is the second bacterial high-molecular weight FabG structurally characterized, following FabG4 from Mycobacterium. We show that DeltaAbHMwfabG is impaired for growth in nutrient rich media and pellicle formation. We also modelled a third 3-oxoacyl-ACP reductase, which we annotated as AbSDR. Despite containing residues for catalysis and the ACP coordinating motif, biochemical analyses showed limited activity against an acetoacetyl-CoA substrate in vitro. Inhibitors designed to target FabG proteins and thus prevent fatty acid synthesis may provide a platform for use against multidrug-resistant pathogens including A. baumannii.
		+
		+	Insights into Acinetobacter baumannii fatty acid synthesis 3-oxoacyl-ACP reductases.,Cross EM, Adams FG, Waters JK, Aragao D, Eijkelkamp BA, Forwood JK Sci Rep. 2021 Mar 29;11(1):7050. doi: 10.1038/s41598-021-86400-1. PMID:33782435<ref>PMID:33782435</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6uuv" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Beta-hydroxyacyl-acyl carrier protein dehydratase 3D structures\|Beta-hydroxyacyl-acyl carrier protein dehydratase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aciba]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Cross, E M]]		[[Category: Cross, E M]]

OCA at 08:28, 4 December 2019

2019-12-04T08:28:16Z

←Older revision		Revision as of 08:28, 4 December 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6uuv is ON HOLD~~	+	==Crystal structure of a high molecular weight 3-oxoacyl-ACP reductase (FabG) from Acinetobacter baumannii crystal form 1==
-		+	<StructureSection load='6uuv' size='340' side='right'caption='[[6uuv]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~Authors: Cross, E.M., Forwood, J.K.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6uuv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UUV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UUV FirstGlance]. <br>
-	~~Description:~~ Crystal structure of a high molecular weight 3-oxoacyl-ACP reductase (FabG) from Acinetobacter baumannii crystal form 1	+	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacyl-[acyl-carrier-protein]_reductase 3-oxoacyl-[acyl-carrier-protein] reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.100 1.1.1.100] </span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6uuv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uuv OCA], [http://pdbe.org/6uuv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uuv RCSB], [http://www.ebi.ac.uk/pdbsum/6uuv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uuv ProSAT]</span></td></tr>
-	[[Category: Forwood, J.K]]	+	</table>
-	[[Category: ~~Cross, E.M~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Cross, E M]]
		+	[[Category: Forwood, J K]]
		+	[[Category: 3-oxoacyl-acp]]
		+	[[Category: Fabg]]
		+	[[Category: Hmw]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Reductase]]

OCA: Protected "6uuv" [edit=sysop:move=sysop]

2019-11-06T05:26:36Z

Protected "6uuv" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:26, 6 November 2019

OCA: New page: '''Unreleased structure''' The entry 6uuv is ON HOLD Authors: Cross, E.M., Forwood, J.K. Description: Crystal structure of a high molecular weight 3-oxoacyl-ACP reductase (FabG) from A...

2019-11-06T05:26:35Z

New page: '''Unreleased structure''' The entry 6uuv is ON HOLD Authors: Cross, E.M., Forwood, J.K. Description: Crystal structure of a high molecular weight 3-oxoacyl-ACP reductase (FabG) from A...

New page

'''Unreleased structure'''

The entry 6uuv is ON HOLD

Authors: Cross, E.M., Forwood, J.K.

Description: Crystal structure of a high molecular weight 3-oxoacyl-ACP reductase (FabG) from Acinetobacter baumannii crystal form 1
[[Category: Unreleased Structures]]
[[Category: Forwood, J.K]]
[[Category: Cross, E.M]]