6v8y - Revision history

OCA at 08:06, 11 October 2023

2023-10-11T08:06:10Z

←Older revision		Revision as of 08:06, 11 October 2023
Line 3:		Line 3:
	<StructureSection load='6v8y' size='340' side='right'caption='[[6v8y]], [[Resolution\|resolution]] 1.53Å' scene=''>		<StructureSection load='6v8y' size='340' side='right'caption='[[6v8y]], [[Resolution\|resolution]] 1.53Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6v8y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_14579 Atcc 14579~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6V8Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6V8Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6v8y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6V8Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6V8Y FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.53Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A9485_19160, B4155_3291, BACERE00184_02078, CN419_22740, CN950_06075, CN980_22870, COI98_17615, COK18_26145, CON37_12595 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 ATCC 14579])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6v8y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6v8y OCA], [https://pdbe.org/6v8y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6v8y RCSB], [https://www.ebi.ac.uk/pdbsum/6v8y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6v8y ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6v8y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6v8y OCA], [https://pdbe.org/6v8y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6v8y RCSB], [https://www.ebi.ac.uk/pdbsum/6v8y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6v8y ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q81HW2_BACCR Q81HW2_BACCR]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 14579~~]]	+	[[Category: Bacillus cereus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Coates, L]]	+	[[Category: Coates L]]
-	[[Category: Roy, R]]	+	[[Category: Roy R]]
-	[[Category: Weiss~~, K L]]~~	+	[[Category: Weiss KL]]
-	~~[[Category: Ion channel]]~~	+
-	~~[[Category: Membrane protein~~]]	+

OCA at 10:14, 19 May 2021

2021-05-19T10:14:36Z

←Older revision		Revision as of 10:14, 19 May 2021
Line 1:		Line 1:

	==Structure of a Sodium Potassium ion Channel==		==Structure of a Sodium Potassium ion Channel==
-	<StructureSection load='6v8y' size='340' side='right'caption='[[6v8y]]' scene=''>	+	<StructureSection load='6v8y' size='340' side='right'caption='[[6v8y]], [[Resolution\|resolution]] 1.53Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6V8Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6V8Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6v8y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_14579 Atcc 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6V8Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6V8Y FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6v8y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6v8y OCA], [https://pdbe.org/6v8y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6v8y RCSB], [https://www.ebi.ac.uk/pdbsum/6v8y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6v8y ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A9485_19160, B4155_3291, BACERE00184_02078, CN419_22740, CN950_06075, CN980_22870, COI98_17615, COK18_26145, CON37_12595 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 ATCC 14579])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6v8y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6v8y OCA], [https://pdbe.org/6v8y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6v8y RCSB], [https://www.ebi.ac.uk/pdbsum/6v8y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6v8y ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The sodium potassium ion channel (NaK) is a nonselective ion channel that conducts both sodium and potassium across the cellular membrane. A new crystallographic structure of NaK reveals conformational differences in the residues that make up the selectivity filter between the four subunits that form the ion channel and the inner helix of the ion channel. The crystallographic structure also identifies a side-entry, ion-conduction pathway for Na(+) permeation that is unique to NaK. NMR studies and molecular dynamics simulations confirmed the dynamical nature of the top part of the selectivity filter and the inner helix in NaK as also observed in the crystal structure. Taken together, these results indicate that the structural plasticity of the selectivity filter combined with the dynamics of the inner helix of NaK are vital for the efficient conduction of different ions through the non-selective ion channel of NaK.
		+
		+	Structural plasticity of the selectivity filter in a nonselective ion channel.,Roy RN, Hendriks K, Kopec W, Abdolvand S, Weiss KL, de Groot BL, Lange A, Sun H, Coates L IUCrJ. 2021 Apr 2;8(Pt 3):421-430. doi: 10.1107/S205225252100213X. eCollection, 2021 May 1. PMID:33953928<ref>PMID:33953928</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6v8y" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 14579]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Coates L]]	+	[[Category: Coates, L]]
-	[[Category: Roy R]]	+	[[Category: Roy, R]]
-	[[Category: Weiss KL]]	+	[[Category: Weiss, K L]]
		+	[[Category: Ion channel]]
		+	[[Category: Membrane protein]]

OCA at 06:42, 14 April 2021

2021-04-14T06:42:43Z

←Older revision		Revision as of 06:42, 14 April 2021
Line 1:		Line 1:
-	~~WITHDRAWN~~: ~~The PDB entry~~ 6V8Y ~~was withdrawn~~.	+
		+	==Structure of a Sodium Potassium ion Channel==
		+	<StructureSection load='6v8y' size='340' side='right'caption='[[6v8y]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6V8Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6V8Y FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6v8y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6v8y OCA], [https://pdbe.org/6v8y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6v8y RCSB], [https://www.ebi.ac.uk/pdbsum/6v8y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6v8y ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Coates L]]
		+	[[Category: Roy R]]
		+	[[Category: Weiss KL]]

OCA at 07:05, 2 December 2020

2020-12-02T07:05:00Z

←Older revision		Revision as of 07:05, 2 December 2020
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	WITHDRAWN: The PDB entry 6V8Y was withdrawn.
-		+
-	The entry ~~6v8y is ON HOLD until Paper Publication~~	+
-		+
-	~~Authors:~~	+
-		+
-	~~Description:~~	+
-	~~[[Category: Unreleased Structures]]~~	+

OCA at 05:26, 2 December 2020

2020-12-02T05:26:34Z

←Older revision		Revision as of 05:26, 2 December 2020
Line 1:		Line 1:
-	~~WITHDRAWN:~~ The ~~PDB~~ entry ~~6V8Y was withdrawn.~~	+	'''Unreleased structure'''
		+
		+	The entry 6v8y is ON HOLD until Paper Publication
		+
		+	Authors:
		+
		+	Description:
		+	[[Category: Unreleased Structures]]

OCA at 09:29, 18 November 2020

2020-11-18T09:29:35Z

←Older revision		Revision as of 09:29, 18 November 2020
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	WITHDRAWN: The PDB entry 6V8Y was withdrawn.
-		+
-	The entry ~~6v8y is ON HOLD~~	+
-		+
-	~~Authors:~~	+
-		+
-	~~Description:~~	+
-	~~[[Category: Unreleased Structures]]~~	+

OCA at 05:15, 4 November 2020

2020-11-04T05:15:25Z

←Older revision		Revision as of 05:15, 4 November 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6v8y is ON HOLD ~~until Paper Publication~~	+	The entry 6v8y is ON HOLD

	Authors:		Authors:

OCA at 08:05, 26 February 2020

2020-02-26T08:05:52Z

←Older revision		Revision as of 08:05, 26 February 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6v8y is ON HOLD	+	The entry 6v8y is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6v8y" [edit=sysop:move=sysop]

2019-12-18T06:08:23Z

Protected "6v8y" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:08, 18 December 2019

OCA: New page: '''Unreleased structure''' The entry 6v8y is ON HOLD Authors: Description: Category: Unreleased Structures

2019-12-18T06:08:21Z

New page: '''Unreleased structure''' The entry 6v8y is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6v8y is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]