6y0k - Revision history

OCA at 13:16, 24 January 2024

2024-01-24T13:16:35Z

←Older revision		Revision as of 13:16, 24 January 2024
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	<StructureSection load='6y0k' size='340' side='right'caption='[[6y0k]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='6y0k' size='340' side='right'caption='[[6y0k]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6y0k]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Thet8 Thet8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y0K OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6Y0K FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6y0k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Y0K FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1325 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6y0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y0k OCA], [~~http~~://pdbe.org/6y0k PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6y0k RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6y0k PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6y0k ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6y0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y0k OCA], [https://pdbe.org/6y0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6y0k RCSB], [https://www.ebi.ac.uk/pdbsum/6y0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6y0k ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5SIP4_THET8 Q5SIP4_THET8]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6y0k" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6y0k" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Sulfite Oxidase\|Sulfite Oxidase]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Thet8~~]]	+	[[Category: Thermus thermophilus HB8]]
-	[[Category: Djeghader, A]]	+	[[Category: Djeghader A]]
-	[[Category: Soulimane, T]]	+	[[Category: Soulimane T]]
-	~~[[Category: Molybdoenzyme]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Sulfite oxidase~~]]	+

OCA at 10:07, 12 August 2020

2020-08-12T10:07:21Z

←Older revision		Revision as of 10:07, 12 August 2020
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	==Sulfite oxidase from Thermus thermophilus with coordinated phosphate==		==Sulfite oxidase from Thermus thermophilus with coordinated phosphate==
-	<StructureSection load='6y0k' size='340' side='right'caption='[[6y0k]]' scene=''>	+	<StructureSection load='6y0k' size='340' side='right'caption='[[6y0k]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y0K OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y0K FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6y0k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y0K OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y0K FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y0k OCA], [http://pdbe.org/6y0k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y0k RCSB], [http://www.ebi.ac.uk/pdbsum/6y0k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y0k ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1325 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y0k OCA], [http://pdbe.org/6y0k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y0k RCSB], [http://www.ebi.ac.uk/pdbsum/6y0k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y0k ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	By combining X-ray crystallography, electron paramagnetic resonance techniques and density functional theory-based modelling, we provide evidence for a direct coordination of the product analogue, phosphate, to the molybdenum active site of a sulfite dehydrogenase. This interaction is mimicking the still experimentally uncharacterized reaction intermediate proposed to arise during the catalytic cycle of this class of enzymes. This work opens new perspectives for further deciphering the reaction mechanism of this nearly ubiquitous class of oxidoreductases.
		+
		+	Structural evidence for a reaction intermediate mimic in the active site of a sulfite dehydrogenase.,Djeghader A, Rossotti M, Abdulkarim S, Biaso F, Gerbaud G, Nitschke W, Schoepp-Cothenet B, Soulimane T, Grimaldi S Chem Commun (Camb). 2020 Jul 27. doi: 10.1039/d0cc03634j. PMID:32716419<ref>PMID:32716419</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6y0k" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Djeghader A]]	+	[[Category: Thet8]]
-	[[Category: Soulimane T]]	+	[[Category: Djeghader, A]]
		+	[[Category: Soulimane, T]]
		+	[[Category: Molybdoenzyme]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Sulfite oxidase]]

OCA at 05:35, 5 August 2020

2020-08-05T05:35:41Z

←Older revision		Revision as of 05:35, 5 August 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6y0k ~~is ON HOLD until Paper Publication~~	+	==Sulfite oxidase from Thermus thermophilus with coordinated phosphate==
-		+	<StructureSection load='6y0k' size='340' side='right'caption='[[6y0k]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y0K OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y0K FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y0k OCA], [http://pdbe.org/6y0k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y0k RCSB], [http://www.ebi.ac.uk/pdbsum/6y0k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y0k ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Djeghader A]]
		+	[[Category: Soulimane T]]

OCA: Protected "6y0k" [edit=sysop:move=sysop]

2020-02-19T05:25:26Z

Protected "6y0k" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:25, 19 February 2020

OCA: New page: '''Unreleased structure''' The entry 6y0k is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2020-02-19T05:25:25Z

New page: '''Unreleased structure''' The entry 6y0k is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6y0k is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]