6y8g - Revision history

OCA at 06:09, 2 March 2023

2023-03-02T06:09:03Z

←Older revision		Revision as of 06:09, 2 March 2023
Line 3:		Line 3:
	<StructureSection load='6y8g' size='340' side='right'caption='[[6y8g]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6y8g' size='340' side='right'caption='[[6y8g]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6y8g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"ruminiclostridium_thermocellum"_(viljoen_et_al._1926)_yutin_and_galperin_2013 "ruminiclostridium thermocellum" (viljoen et al. 1926) yutin and galperin 2013~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Y8G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6y8g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Y8G FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene~~></td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xynY ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 "Ruminiclostridium thermocellum" (Viljoen et al. 1926) Yutin and Galperin 2013])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6y8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y8g OCA], [https://pdbe.org/6y8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6y8g RCSB], [https://www.ebi.ac.uk/pdbsum/6y8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6y8g ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6y8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y8g OCA], [https://pdbe.org/6y8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6y8g RCSB], [https://www.ebi.ac.uk/pdbsum/6y8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6y8g ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/XYNY_ACETH XYNY_ACETH]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Endo-1,4-beta-xylanase~~]]	+	[[Category: Acetivibrio thermocellus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Carpentier, P]]	+	[[Category: Carpentier P]]
-	[[Category: Flot, D]]	+	[[Category: Flot D]]
-	[[Category: Mueller-Dieckmann, C]]	+	[[Category: Mueller-Dieckmann C]]
-	[[Category: Stetten, D ~~von]]~~	+	[[Category: Von Stetten D]]
-	~~[[Category: Hydrolase~~]]	+

OCA at 15:28, 8 June 2021

2021-06-08T15:28:05Z

←Older revision		Revision as of 15:28, 8 June 2021
Line 3:		Line 3:
	<StructureSection load='6y8g' size='340' side='right'caption='[[6y8g]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6y8g' size='340' side='right'caption='[[6y8g]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6y8g]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"ruminiclostridium_thermocellum"_(viljoen_et_al._1926)_yutin_and_galperin_2013 "ruminiclostridium thermocellum" (viljoen et al. 1926) yutin and galperin 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y8G OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6Y8G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6y8g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"ruminiclostridium_thermocellum"_(viljoen_et_al._1926)_yutin_and_galperin_2013 "ruminiclostridium thermocellum" (viljoen et al. 1926) yutin and galperin 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Y8G FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xynY ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 "Ruminiclostridium thermocellum" (Viljoen et al. 1926) Yutin and Galperin 2013])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xynY ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 "Ruminiclostridium thermocellum" (Viljoen et al. 1926) Yutin and Galperin 2013])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6y8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y8g OCA], [~~http~~://pdbe.org/6y8g PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6y8g RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6y8g PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6y8g ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6y8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y8g OCA], [https://pdbe.org/6y8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6y8g RCSB], [https://www.ebi.ac.uk/pdbsum/6y8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6y8g ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:43, 3 June 2020

2020-06-03T06:43:25Z

←Older revision		Revision as of 06:43, 3 June 2020
Line 1:		Line 1:

	==selenomethionine derivative of ferulic acid esterase (FAE)==		==selenomethionine derivative of ferulic acid esterase (FAE)==
-	<StructureSection load='6y8g' size='340' side='right'caption='[[6y8g]]' scene=''>	+	<StructureSection load='6y8g' size='340' side='right'caption='[[6y8g]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y8G OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y8G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6y8g]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"ruminiclostridium_thermocellum"_(viljoen_et_al._1926)_yutin_and_galperin_2013 "ruminiclostridium thermocellum" (viljoen et al. 1926) yutin and galperin 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y8G OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y8G FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y8g OCA], [http://pdbe.org/6y8g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y8g RCSB], [http://www.ebi.ac.uk/pdbsum/6y8g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y8g ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xynY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 "Ruminiclostridium thermocellum" (Viljoen et al. 1926) Yutin and Galperin 2013])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y8g OCA], [http://pdbe.org/6y8g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y8g RCSB], [http://www.ebi.ac.uk/pdbsum/6y8g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y8g ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	ID30A-3 (or MASSIF-3) is a mini-focus (beam size 18 microm x 14 microm) highly intense (2.0 x 10(13) photons s(-1)), fixed-energy (12.81 keV) beamline for macromolecular crystallography (MX) experiments at the European Synchrotron Radiation Facility (ESRF). MASSIF-3 is one of two fixed-energy beamlines sited on the first branch of the canted undulator setup on the ESRF ID30 port and is equipped with a MD2 micro-diffractometer, a Flex HCD sample changer, and an Eiger X 4M fast hybrid photon-counting detector. MASSIF-3 is recommended for collecting diffraction data from single small crystals (</=15 microm in one dimension) or for experiments using serial methods. The end-station has been in full user operation since December 2014, and here its current characteristics and capabilities are described.
		+
		+	ID30A-3 (MASSIF-3) - a beamline for macromolecular crystallography at the ESRF with a small intense beam.,von Stetten D, Carpentier P, Flot D, Beteva A, Caserotto H, Dobias F, Guijarro M, Giraud T, Lentini M, McSweeney S, Royant A, Petitdemange S, Sinoir J, Surr J, Svensson O, Theveneau P, Leonard GA, Mueller-Dieckmann C J Synchrotron Radiat. 2020 May 1;27(Pt 3):844-851. doi:, 10.1107/S1600577520004002. Epub 2020 Apr 29. PMID:32381789<ref>PMID:32381789</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6y8g" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Carpentier P]]	+	[[Category: Carpentier, P]]
-	[[Category: Flot D]]	+	[[Category: Flot, D]]
-	[[Category: Mueller-Dieckmann C]]	+	[[Category: Mueller-Dieckmann, C]]
-	[[Category: ~~Von~~ Stetten D]]	+	[[Category: Stetten, D von]]
		+	[[Category: Hydrolase]]

OCA at 05:52, 20 May 2020

2020-05-20T05:52:32Z

←Older revision		Revision as of 05:52, 20 May 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6y8g ~~is ON HOLD~~	+	==selenomethionine derivative of ferulic acid esterase (FAE)==
-		+	<StructureSection load='6y8g' size='340' side='right'caption='[[6y8g]]' scene=''>
-	~~Authors~~: ~~von Stetten, D~~., ~~Mueller~~-~~Dieckmann~~, C., ~~Carpentier~~, P., ~~Flot, D~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y8G OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Y8G FirstGlance]. <br>
-	~~Description: selenomethionine derivative of ferulic acid esterase (FAE)~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6y8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y8g OCA], [http://pdbe.org/6y8g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6y8g RCSB], [http://www.ebi.ac.uk/pdbsum/6y8g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6y8g ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Flot, D~~]]	+	__TOC__
-	[[Category: ~~Von Stetten,~~ D]]	+	</StructureSection>
-	[[Category: Mueller-Dieckmann, C]]	+	[[Category: Large Structures]]
-	[[Category: ~~Carpentier, P~~]]	+	[[Category: Carpentier P]]
		+	[[Category: Flot D]]
		+	[[Category: Mueller-Dieckmann C]]
		+	[[Category: Von Stetten D]]

OCA: Protected "6y8g" [edit=sysop:move=sysop]

2020-03-11T06:17:05Z

Protected "6y8g" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:17, 11 March 2020

OCA: New page: '''Unreleased structure''' The entry 6y8g is ON HOLD Authors: von Stetten, D., Mueller-Dieckmann, C., Carpentier, P., Flot, D. Description: selenomethionine derivative of ferulic acid ...

2020-03-11T06:17:04Z

New page: '''Unreleased structure''' The entry 6y8g is ON HOLD Authors: von Stetten, D., Mueller-Dieckmann, C., Carpentier, P., Flot, D. Description: selenomethionine derivative of ferulic acid ...

New page

'''Unreleased structure'''

The entry 6y8g is ON HOLD

Authors: von Stetten, D., Mueller-Dieckmann, C., Carpentier, P., Flot, D.

Description: selenomethionine derivative of ferulic acid esterase (FAE)
[[Category: Unreleased Structures]]
[[Category: Flot, D]]
[[Category: Von Stetten, D]]
[[Category: Mueller-Dieckmann, C]]
[[Category: Carpentier, P]]