6yfu - Revision history

OCA at 13:26, 24 January 2024

2024-01-24T13:26:02Z

←Older revision		Revision as of 13:26, 24 January 2024
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	<StructureSection load='6yfu' size='340' side='right'caption='[[6yfu]], [[Resolution\|resolution]] 4.02Å' scene=''>		<StructureSection load='6yfu' size='340' side='right'caption='[[6yfu]], [[Resolution\|resolution]] 4.02Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6yfu]] is a 60 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Wenzhou_levi-like_virus_4 Wenzhou levi-like virus 4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6YFU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yfu]] is a 60 chain structure with sequence from [https://en.wikipedia.org/wiki/Wenzhou_levi-like_virus_4 Wenzhou levi-like virus 4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YFU FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[6yf7\|6yf7]]~~, [[~~6yf9~~\|~~6yf9~~]], [[6yfa\|6yfa]], [[6yfb\|6yfb]], [[6yfc\|6yfc]], [[6yfd\|6yfd]], [[6yfe\|6yfe]], [[6yff\|6yff]], [[6yfg\|6yfg]], [[6yfh\|6yfh]], [[6yfi\|6yfi]], [[6yfj\|6yfj]], [[6yfk\|6yfk]], [[6yfl\|6yfl]], [[6yfm\|6yfm]], [[6yfn\|6yfn]], [[6yfo\|6yfo]], [[6yfp\|6yfp]], [[6yfq\|6yfq]], [[6yfr\|6yfr]], [[6yfs\|6yfs]], [[6yft\|6yft]]</div></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 4.018Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6yfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfu OCA], [~~http~~://pdbe.org/6yfu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6yfu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6yfu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfu OCA], [https://pdbe.org/6yfu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yfu RCSB], [https://www.ebi.ac.uk/pdbsum/6yfu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfu ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Wenzhou levi-like virus 4]]		[[Category: Wenzhou levi-like virus 4]]
-	[[Category: Kalnins, G]]	+	[[Category: Kalnins G]]
-	[[Category: Lieknina, I]]	+	[[Category: Lieknina I]]
-	[[Category: Rumnieks, J]]	+	[[Category: Rumnieks J]]
-	[[Category: Sisovs, M]]	+	[[Category: Sisovs M]]
-	[[Category: Tars, K]]	+	[[Category: Tars K]]
-	~~[[Category: Structural protein]]~~	+
-	~~[[Category: Virus]]~~	+
-	~~[[Category: Virus like particle]]~~	+
-	~~[[Category: Virus-like particle~~]]	+

OCA at 12:56, 16 December 2020

2020-12-16T12:56:34Z

←Older revision		Revision as of 12:56, 16 December 2020
Line 1:		Line 1:

	==Virus-like particle of Wenzhou levi-like virus 4==		==Virus-like particle of Wenzhou levi-like virus 4==
-	<StructureSection load='6yfu' size='340' side='right'caption='[[6yfu]]' scene=''>	+	<StructureSection load='6yfu' size='340' side='right'caption='[[6yfu]], [[Resolution\|resolution]] 4.02Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YFU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yfu]] is a 60 chain structure with sequence from [http://en.wikipedia.org/wiki/Wenzhou_levi-like_virus_4 Wenzhou levi-like virus 4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YFU FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfu OCA], [http://pdbe.org/6yfu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yfu RCSB], [http://www.ebi.ac.uk/pdbsum/6yfu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfu ProSAT]</span></td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6yf7\|6yf7]], [[6yf9\|6yf9]], [[6yfa\|6yfa]], [[6yfb\|6yfb]], [[6yfc\|6yfc]], [[6yfd\|6yfd]], [[6yfe\|6yfe]], [[6yff\|6yff]], [[6yfg\|6yfg]], [[6yfh\|6yfh]], [[6yfi\|6yfi]], [[6yfj\|6yfj]], [[6yfk\|6yfk]], [[6yfl\|6yfl]], [[6yfm\|6yfm]], [[6yfn\|6yfn]], [[6yfo\|6yfo]], [[6yfp\|6yfp]], [[6yfq\|6yfq]], [[6yfr\|6yfr]], [[6yfs\|6yfs]], [[6yft\|6yft]]</div></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfu OCA], [http://pdbe.org/6yfu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yfu RCSB], [http://www.ebi.ac.uk/pdbsum/6yfu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfu ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The single-stranded RNA (ssRNA) bacteriophages are among the simplest known viruses with small genomes and exceptionally high mutation rates. The number of ssRNA phage isolates has remained very low, but recent metagenomic studies have uncovered an immense variety of distinct uncultured ssRNA phages. The coat proteins (CPs) in these genomes are particularly diverse, with notable variation in length and often no recognizable similarity to previously known viruses. We recombinantly expressed metagenome-derived ssRNA phage CPs to produce virus-like particles and determined the three-dimensional structure of 22 previously uncharacterized ssRNA phage capsids covering nine distinct CP types. The structures revealed substantial deviations from the previously known ssRNA phage CP fold, uncovered an unusual prolate particle shape, and revealed a previously unseen dsRNA binding mode. These data expand our knowledge of the evolution of viral structural proteins and are of relevance for applications such as ssRNA phage-based vaccine design.
		+
		+	Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes.,Rumnieks J, Lieknina I, Kalnins G, Sisovs M, Akopjana I, Bogans J, Tars K Sci Adv. 2020 Sep 2;6(36). pii: 6/36/eabc0023. doi: 10.1126/sciadv.abc0023. Print, 2020 Sep. PMID:32917600<ref>PMID:32917600</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6yfu" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kalnins G]]	+	[[Category: Wenzhou levi-like virus 4]]
-	[[Category: Lieknina I]]	+	[[Category: Kalnins, G]]
-	[[Category: Rumnieks J]]	+	[[Category: Lieknina, I]]
-	[[Category: Sisovs M]]	+	[[Category: Rumnieks, J]]
-	[[Category: Tars K]]	+	[[Category: Sisovs, M]]
		+	[[Category: Tars, K]]
		+	[[Category: Structural protein]]
		+	[[Category: Virus]]
		+	[[Category: Virus like particle]]
		+	[[Category: Virus-like particle]]

OCA at 06:52, 2 September 2020

2020-09-02T06:52:56Z

←Older revision		Revision as of 06:52, 2 September 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6yfu ~~is ON HOLD until Paper Publication~~	+	==Virus-like particle of Wenzhou levi-like virus 4==
-		+	<StructureSection load='6yfu' size='340' side='right'caption='[[6yfu]]' scene=''>
-	~~Authors~~: ~~Rumnieks~~, J., ~~Kalnins, G~~., ~~Sisovs, M~~., ~~Lieknina, I~~., ~~Tars, K~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YFU FirstGlance]. <br>
-	~~Description: Virus-like particle of Wenzhou levi-like virus 4~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfu OCA], [http://pdbe.org/6yfu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yfu RCSB], [http://www.ebi.ac.uk/pdbsum/6yfu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfu ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Lieknina, I~~]]	+	__TOC__
-	[[Category: ~~Kalnins, G~~]]	+	</StructureSection>
-	[[Category: Rumnieks, J]]	+	[[Category: Large Structures]]
-	[[Category: Sisovs, M]]	+	[[Category: Kalnins G]]
-	[[Category: Tars, K]]	+	[[Category: Lieknina I]]
		+	[[Category: Rumnieks J]]
		+	[[Category: Sisovs M]]
		+	[[Category: Tars K]]

OCA at 07:22, 22 July 2020

2020-07-22T07:22:13Z

←Older revision		Revision as of 07:22, 22 July 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6yfu is ON HOLD	+	The entry 6yfu is ON HOLD until Paper Publication

	Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K.		Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K.

OCA: Protected "6yfu" [edit=sysop:move=sysop]

2020-04-01T07:48:53Z

Protected "6yfu" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:48, 1 April 2020

OCA: New page: '''Unreleased structure''' The entry 6yfu is ON HOLD Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K. Description: Virus-like particle of Wenzhou levi-like virus ...

2020-04-01T07:48:52Z

New page: '''Unreleased structure''' The entry 6yfu is ON HOLD Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K. Description: Virus-like particle of Wenzhou levi-like virus ...

New page

'''Unreleased structure'''

The entry 6yfu is ON HOLD

Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K.

Description: Virus-like particle of Wenzhou levi-like virus 4
[[Category: Unreleased Structures]]
[[Category: Lieknina, I]]
[[Category: Kalnins, G]]
[[Category: Rumnieks, J]]
[[Category: Sisovs, M]]
[[Category: Tars, K]]