OCA at 13:29, 24 January 2024

2024-01-24T13:29:50Z

←Older revision		Revision as of 13:29, 24 January 2024
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-	====	+	==Crystal structure of human bcl-xL bound to trichoplax adhaerens trBak BH3==
-	<StructureSection load='6yli' size='340' side='right'caption='[[6yli]]' scene=''>	+	<StructureSection load='6yli' size='340' side='right'caption='[[6yli]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yli]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Trichoplax_sp._H2 Trichoplax sp. H2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YLI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YLI FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yli OCA], [https://pdbe.org/6yli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yli RCSB], [https://www.ebi.ac.uk/pdbsum/6yli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yli ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yli OCA], [https://pdbe.org/6yli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yli RCSB], [https://www.ebi.ac.uk/pdbsum/6yli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yli ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/B2CL1_HUMAN B2CL1_HUMAN] Potent inhibitor of cell death. Inhibits activation of caspases (By similarity). Appears to regulate cell death by blocking the voltage-dependent anion channel (VDAC) by binding to it and preventing the release of the caspase activator, CYC1, from the mitochondrial membrane. Also acts as a regulator of G2 checkpoint and progression to cytokinesis during mitosis.<ref>PMID:19917720</ref> <ref>PMID:21840391</ref> Isoform Bcl-X(S) promotes apoptosis.<ref>PMID:19917720</ref> <ref>PMID:21840391</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In metazoans, Bcl-2 family proteins are major regulators of mitochondrially mediated apoptosis; however, their evolution remains poorly understood. Here, we describe the molecular characterization of the four members of the Bcl-2 family in the most primitive metazoan, Trichoplax adhaerens All four trBcl-2 homologs are multimotif Bcl-2 group, with trBcl-2L1 and trBcl-2L2 being highly divergent antiapoptotic Bcl-2 members, whereas trBcl-2L3 and trBcl-2L4 are homologs of proapoptotic Bax and Bak, respectively. trBax expression permeabilizes the mitochondrial outer membrane, while trBak operates as a BH3-only sensitizer repressing antiapoptotic activities of trBcl-2L1 and trBcl-2L2. The crystal structure of a trBcl-2L2:trBak BH3 complex reveals that trBcl-2L2 uses the canonical Bcl-2 ligand binding groove to sequester trBak BH3, indicating that the structural basis for apoptosis control is conserved from T. adhaerens to mammals. Finally, we demonstrate that both trBax and trBak BH3 peptides bind selectively to human Bcl-2 homologs to sensitize cancer cells to chemotherapy treatment.
		+
		+	Ancient and conserved functional interplay between Bcl-2 family proteins in the mitochondrial pathway of apoptosis.,Popgeorgiev N, Sa JD, Jabbour L, Banjara S, Nguyen TTM, Akhavan-E-Sabet A, Gadet R, Ralchev N, Manon S, Hinds MG, Osigus HJ, Schierwater B, Humbert PO, Rimokh R, Gillet G, Kvansakul M Sci Adv. 2020 Sep 30;6(40):eabc4149. doi: 10.1126/sciadv.abc4149. Print 2020 Sep. PMID:32998881<ref>PMID:32998881</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6yli" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[B-cell lymphoma proteins 3D structures\|B-cell lymphoma proteins 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Trichoplax sp. H2]]
		+	[[Category: Banjara S]]
		+	[[Category: D Sa J]]
		+	[[Category: Kvansakul M]]

OCA at 06:43, 17 March 2021

2021-03-17T06:43:19Z

←Older revision		Revision as of 06:43, 17 March 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 6yli ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='6yli' size='340' side='right'caption='[[6yli]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yli OCA], [https://pdbe.org/6yli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yli RCSB], [https://www.ebi.ac.uk/pdbsum/6yli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yli ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA: Protected "6yli" [edit=sysop:move=sysop]

2020-04-15T05:35:38Z

Protected "6yli" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:35, 15 April 2020

OCA: New page: '''Unreleased structure''' The entry 6yli is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2020-04-15T05:35:37Z

New page: '''Unreleased structure''' The entry 6yli is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6yli is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]

6yli - Revision history

OCA at 13:29, 24 January 2024

OCA at 06:43, 17 March 2021

OCA: Protected "6yli" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 6yli is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures