6yqq - Revision history

OCA at 07:40, 1 May 2024

2024-05-01T07:40:07Z

←Older revision		Revision as of 07:40, 1 May 2024
Line 3:		Line 3:
	<StructureSection load='6yqq' size='340' side='right'caption='[[6yqq]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='6yqq' size='340' side='right'caption='[[6yqq]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6yqq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus coli" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YQQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yqq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_kaniharaensis Streptomyces kaniharaensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YQQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRP:ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC+ACID'>PRP</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cof6, F7Q99_03185 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRP:ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC+ACID'>PRP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yqq OCA], [https://pdbe.org/6yqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yqq RCSB], [https://www.ebi.ac.uk/pdbsum/6yqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yqq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yqq OCA], [https://pdbe.org/6yqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yqq RCSB], [https://www.ebi.ac.uk/pdbsum/6yqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yqq ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/A0A5S9CYM0_9ACTN A0A5S9CYM0_9ACTN]
-	The enzyme ForT catalyzes C-C bond formation between 5'-phosphoribosyl-1'-pyrophosphate (PRPP) and 4-amino-1H-pyrazole-3,5-dicarboxylate to make a key intermediate in the biosynthesis of formycin A 5'-phosphate by Streptomyces kaniharaensis. We report the 2.5 A resolution structure of the ForT/PRPP complex and locate active site residues critical for PRPP recognition and catalysis.	+
-		+
-	~~Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis~~: ~~crystal structure of a C-glycoside synthase~~/~~PRPP complex.,Gao S, Radadiya A, Li W, Liu H, Zhu W, de Crecy-Lagard V, Richards NGJ, Naismith JH Chem Commun (Camb). 2020 Jul 14;56(55):7617-7620. doi: 10.1039~~/~~d0cc02834g~~. ~~Epub, 2020 Jun 9~~. ~~PMID:32515440<ref>PMID:32515440<~~/~~ref>~~	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 6yqq" style="background-color:#fffaf0;"></div>~~	+
-	~~== References ==~~	+
-	~~<references~~/>	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus coli migula 1895]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Gao, S~~]]	+	[[Category: Streptomyces kaniharaensis]]
-	[[Category: ~~Naismith, J H~~]]	+	[[Category: Gao S]]
-	[[Category: ~~Biosynthetic protein]]~~	+	[[Category: Naismith JH]]
-	~~[[Category: C-glycosidic bond~~]]	+

OCA at 03:46, 2 July 2021

2021-07-02T03:46:45Z

←Older revision		Revision as of 03:46, 2 July 2021
Line 3:		Line 3:
	<StructureSection load='6yqq' size='340' side='right'caption='[[6yqq]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='6yqq' size='340' side='right'caption='[[6yqq]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6yqq]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YQQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6YQQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yqq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YQQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRP:ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC+ACID'>PRP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRP:ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC+ACID'>PRP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6yqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yqq OCA], [~~http~~://pdbe.org/6yqq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6yqq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6yqq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6yqq ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cof6, F7Q99_03185 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yqq OCA], [https://pdbe.org/6yqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yqq RCSB], [https://www.ebi.ac.uk/pdbsum/6yqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yqq ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The enzyme ForT catalyzes C-C bond formation between 5'-phosphoribosyl-1'-pyrophosphate (PRPP) and 4-amino-1H-pyrazole-3,5-dicarboxylate to make a key intermediate in the biosynthesis of formycin A 5'-phosphate by Streptomyces kaniharaensis. We report the 2.5 A resolution structure of the ForT/PRPP complex and locate active site residues critical for PRPP recognition and catalysis.
		+
		+	Uncovering the chemistry of C-C bond formation in C-nucleoside biosynthesis: crystal structure of a C-glycoside synthase/PRPP complex.,Gao S, Radadiya A, Li W, Liu H, Zhu W, de Crecy-Lagard V, Richards NGJ, Naismith JH Chem Commun (Camb). 2020 Jul 14;56(55):7617-7620. doi: 10.1039/d0cc02834g. Epub, 2020 Jun 9. PMID:32515440<ref>PMID:32515440</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6yqq" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Gao, S]]		[[Category: Gao, S]]

OCA at 08:16, 2 December 2020

2020-12-02T08:16:50Z

←Older revision		Revision as of 08:16, 2 December 2020
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	==ForT-PRPP complex==		==ForT-PRPP complex==
-	<StructureSection load='6yqq' size='340' side='right'caption='[[6yqq]]' scene=''>	+	<StructureSection load='6yqq' size='340' side='right'caption='[[6yqq]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YQQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YQQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yqq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YQQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YQQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yqq OCA], [http://pdbe.org/6yqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yqq RCSB], [http://www.ebi.ac.uk/pdbsum/6yqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yqq ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRP:ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC+ACID'>PRP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yqq OCA], [http://pdbe.org/6yqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yqq RCSB], [http://www.ebi.ac.uk/pdbsum/6yqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yqq ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Gao S]]	+	[[Category: Gao, S]]
-	[[Category: Naismith JH]]	+	[[Category: Naismith, J H]]
		+	[[Category: Biosynthetic protein]]
		+	[[Category: C-glycosidic bond]]

OCA at 05:53, 20 May 2020

2020-05-20T05:53:02Z

←Older revision		Revision as of 05:53, 20 May 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6yqq ~~is ON HOLD~~	+	==ForT-PRPP complex==
-		+	<StructureSection load='6yqq' size='340' side='right'caption='[[6yqq]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YQQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YQQ FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yqq OCA], [http://pdbe.org/6yqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yqq RCSB], [http://www.ebi.ac.uk/pdbsum/6yqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yqq ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Gao S]]
		+	[[Category: Naismith JH]]

OCA: Protected "6yqq" [edit=sysop:move=sysop]

2020-04-29T05:25:13Z

Protected "6yqq" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:25, 29 April 2020

OCA: New page: '''Unreleased structure''' The entry 6yqq is ON HOLD Authors: Description: Category: Unreleased Structures

2020-04-29T05:25:12Z

New page: '''Unreleased structure''' The entry 6yqq is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6yqq is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]