6zk8 - Revision history

OCA at 11:53, 1 February 2024

2024-02-01T11:53:51Z

←Older revision		Revision as of 11:53, 1 February 2024
Line 1:		Line 1:

	==Native crystal structure of anaerobic F420H2-Oxidase from Methanothermococcus thermolithotrophicus at 1.8A resolution==		==Native crystal structure of anaerobic F420H2-Oxidase from Methanothermococcus thermolithotrophicus at 1.8A resolution==
-	<StructureSection load='6zk8' size='340' side='right'caption='[[6zk8]]' scene=''>	+	<StructureSection load='6zk8' size='340' side='right'caption='[[6zk8]], [[Resolution\|resolution]] 1.83Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZK8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6ZK8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6zk8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermococcus_thermolithotrophicus Methanothermococcus thermolithotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZK8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZK8 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6zk8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zk8 OCA], [~~http~~://pdbe.org/6zk8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6zk8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6zk8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6zk8 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.83Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zk8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zk8 OCA], [https://pdbe.org/6zk8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zk8 RCSB], [https://www.ebi.ac.uk/pdbsum/6zk8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zk8 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A452CSW8_METTL A0A452CSW8_METTL]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	F420H2-oxidase (FprA) catalyses the four-electron reduction of O2 to 2H2O using the reduced form of F420 as electron donor. The hydrophobic O2-channel detected by Kr-derivatization and the concerted movement of a gating loop could contribute to prevent unwanted side-reaction between the catalytic intermediates and solvents, therefore preventing reactive oxygen species formation.
		+
		+	Krypton-derivatization highlights O2-channeling in a four-electron reducing oxidase.,Engilberge S, Wagner T, Carpentier P, Girard E, Shima S Chem Commun (Camb). 2020 Sep 17;56(74):10863-10866. doi: 10.1039/d0cc04557h. PMID:32940290<ref>PMID:32940290</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6zk8" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Methanothermococcus thermolithotrophicus]]
	[[Category: Carpentier P]]		[[Category: Carpentier P]]
	[[Category: Engilberge S]]		[[Category: Engilberge S]]

OCA at 06:56, 25 November 2020

2020-11-25T06:56:43Z

←Older revision		Revision as of 06:56, 25 November 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6zk8 is ON HOLD until Paper Publication~~	+	==Native crystal structure of anaerobic F420H2-Oxidase from Methanothermococcus thermolithotrophicus at 1.8A resolution==
-		+	<StructureSection load='6zk8' size='340' side='right'caption='[[6zk8]]' scene=''>
-	~~Authors: Engilberge, S., Wagner, T., Carpentier, P., Girard, E., Shima, S.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZK8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6ZK8 FirstGlance]. <br>
-	~~Description:~~ Native crystal structure of anaerobic F420H2-Oxidase from Methanothermococcus thermolithotrophicus at 1.8A resolution	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6zk8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zk8 OCA], [http://pdbe.org/6zk8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6zk8 RCSB], [http://www.ebi.ac.uk/pdbsum/6zk8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6zk8 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Shima, S~~]]	+	__TOC__
-	[[Category: ~~Wagner, T~~]]	+	</StructureSection>
-	[[Category: Girard, E]]	+	[[Category: Large Structures]]
-	[[Category: ~~Carpentier, P~~]]	+	[[Category: Carpentier P]]
-	[[Category: ~~Engilberge, S~~]]	+	[[Category: Engilberge S]]
		+	[[Category: Girard E]]
		+	[[Category: Shima S]]
		+	[[Category: Wagner T]]

OCA at 08:00, 22 July 2020

2020-07-22T08:00:44Z

←Older revision		Revision as of 08:00, 22 July 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6zk8 is ON HOLD	+	The entry 6zk8 is ON HOLD until Paper Publication

	Authors: Engilberge, S., Wagner, T., Carpentier, P., Girard, E., Shima, S.		Authors: Engilberge, S., Wagner, T., Carpentier, P., Girard, E., Shima, S.

OCA: Protected "6zk8" [edit=sysop:move=sysop]

2020-07-08T11:15:37Z

Protected "6zk8" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:15, 8 July 2020

OCA: New page: '''Unreleased structure''' The entry 6zk8 is ON HOLD Authors: Engilberge, S., Wagner, T., Carpentier, P., Girard, E., Shima, S. Description: Native crystal structure of anaerobic F420H...

2020-07-08T11:15:35Z

New page: '''Unreleased structure''' The entry 6zk8 is ON HOLD Authors: Engilberge, S., Wagner, T., Carpentier, P., Girard, E., Shima, S. Description: Native crystal structure of anaerobic F420H...

New page

'''Unreleased structure'''

The entry 6zk8 is ON HOLD

Authors: Engilberge, S., Wagner, T., Carpentier, P., Girard, E., Shima, S.

Description: Native crystal structure of anaerobic F420H2-Oxidase from Methanothermococcus thermolithotrophicus at 1.8A resolution
[[Category: Unreleased Structures]]
[[Category: Shima, S]]
[[Category: Wagner, T]]
[[Category: Girard, E]]
[[Category: Carpentier, P]]
[[Category: Engilberge, S]]