OCA at 11:04, 24 December 2020

2020-12-24T11:04:13Z

←Older revision		Revision as of 11:04, 24 December 2020
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	==Transmembrane helix of tumor necrosis factor alpha in trifluorethanol, AGALLL mutant==		==Transmembrane helix of tumor necrosis factor alpha in trifluorethanol, AGALLL mutant==
-	<StructureSection load='7atb' size='340' side='right'caption='[[7atb]]' scene=''>	+	<StructureSection load='7atb' size='340' side='right'caption='[[7atb]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ATB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7ATB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7atb]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ATB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7ATB FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7atb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7atb OCA], [http://pdbe.org/7atb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7atb RCSB], [http://www.ebi.ac.uk/pdbsum/7atb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7atb ProSAT]</span></td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7asy\|7asy]], [[7at7\|7at7]]</div></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7atb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7atb OCA], [http://pdbe.org/7atb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7atb RCSB], [http://www.ebi.ac.uk/pdbsum/7atb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7atb ProSAT]</span></td></tr>
	</table>		</table>
		+	== Disease ==
		+	[[http://www.uniprot.org/uniprot/TNFA_HUMAN TNFA_HUMAN]] Genetic variations in TNF are a cause of susceptibility psoriatic arthritis (PSORAS) [MIM:[http://omim.org/entry/607507 607507]]. PSORAS is an inflammatory, seronegative arthritis associated with psoriasis. It is a heterogeneous disorder ranging from a mild, non-destructive disease to a severe, progressive, erosive arthropathy. Five types of psoriatic arthritis have been defined: asymmetrical oligoarthritis characterized by primary involvement of the small joints of the fingers or toes; asymmetrical arthritis which involves the joints of the extremities; symmetrical polyarthritis characterized by a rheumatoidlike pattern that can involve hands, wrists, ankles, and feet; arthritis mutilans, which is a rare but deforming and destructive condition; arthritis of the sacroiliac joints and spine (psoriatic spondylitis).
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/TNFA_HUMAN TNFA_HUMAN]] Cytokine that binds to TNFRSF1A/TNFR1 and TNFRSF1B/TNFBR. It is mainly secreted by macrophages and can induce cell death of certain tumor cell lines. It is potent pyrogen causing fever by direct action or by stimulation of interleukin-1 secretion and is implicated in the induction of cachexia, Under certain conditions it can stimulate cell proliferation and induce cell differentiation.<ref>PMID:16829952</ref> The TNF intracellular domain (ICD) form induces IL12 production in dendritic cells.<ref>PMID:16829952</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Ectodomain (EC) shedding defines the proteolytic removal of a membrane protein EC and acts as an important molecular switch in signaling and other cellular processes. Using tumor necrosis factor (TNF)alpha as a model substrate, we identify a non-canonical shedding activity of SPPL2a, an intramembrane cleaving aspartyl protease of the GxGD type. Proline insertions in the TNFalpha transmembrane (TM) helix strongly increased SPPL2a non-canonical shedding, while leucine mutations decreased this cleavage. Using biophysical and structural analysis, as well as molecular dynamic simulations, we identified a flexible region in the center of the TNFalpha wildtype TM domain, which plays an important role in the processing of TNFalpha by SPPL2a. This study combines molecular biology, biochemistry, and biophysics to provide insights into the dynamic architecture of a substrate's TM helix and its impact on non-canonical shedding. Thus, these data will provide the basis to identify further physiological substrates of non-canonical shedding in the future.
		+
		+	Non-canonical Shedding of TNFalpha by SPPL2a Is Determined by the Conformational Flexibility of Its Transmembrane Helix.,Spitz C, Schlosser C, Guschtschin-Schmidt N, Stelzer W, Menig S, Gotz A, Haug-Kroper M, Scharnagl C, Langosch D, Muhle-Goll C, Fluhrer R iScience. 2020 Nov 5;23(12):101775. doi: 10.1016/j.isci.2020.101775. eCollection , 2020 Dec 18. PMID:33294784<ref>PMID:33294784</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7atb" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Guschtschin-Schmidt N]]	+	[[Category: Guschtschin-Schmidt, N]]
-	[[Category: Muhle-Goll C]]	+	[[Category: Muhle-Goll, C]]
		+	[[Category: Helix]]
		+	[[Category: Membrane protein]]
		+	[[Category: Transmembrane domain]]
		+	[[Category: Trifluorethanol]]

OCA at 06:39, 9 December 2020

2020-12-09T06:39:57Z

←Older revision		Revision as of 06:39, 9 December 2020
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-	'''Unreleased structure'''

-	~~The entry 7atb is ON HOLD until Paper Publication~~	+	==Transmembrane helix of tumor necrosis factor alpha in trifluorethanol, AGALLL mutant==
-		+	<StructureSection load='7atb' size='340' side='right'caption='[[7atb]]' scene=''>
-	~~Authors: Guschtschin-Schmidt, N., Muhle-Goll, C.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ATB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7ATB FirstGlance]. <br>
-	~~Description:~~ Transmembrane helix of tumor necrosis factor alpha in trifluorethanol, AGALLL mutant	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7atb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7atb OCA], [http://pdbe.org/7atb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7atb RCSB], [http://www.ebi.ac.uk/pdbsum/7atb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7atb ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category~~: ~~Muhle~~-~~Goll~~, C]]	+	__TOC__
-	[[Category: Guschtschin-Schmidt, N]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Guschtschin-Schmidt N]]
		+	[[Category: Muhle-Goll C]]

OCA at 05:29, 2 December 2020

2020-12-02T05:29:19Z

←Older revision		Revision as of 05:29, 2 December 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7atb is ON HOLD	+	The entry 7atb is ON HOLD until Paper Publication

	Authors: Guschtschin-Schmidt, N., Muhle-Goll, C.		Authors: Guschtschin-Schmidt, N., Muhle-Goll, C.

OCA: Protected "7atb" [edit=sysop:move=sysop]

2020-11-04T05:25:52Z

Protected "7atb" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:25, 4 November 2020

OCA: New page: '''Unreleased structure''' The entry 7atb is ON HOLD Authors: Guschtschin-Schmidt, N., Muhle-Goll, C. Description: Transmembrane helix of tumor necrosis factor alpha in trifluorethanol...

2020-11-04T05:25:51Z

New page: '''Unreleased structure''' The entry 7atb is ON HOLD Authors: Guschtschin-Schmidt, N., Muhle-Goll, C. Description: Transmembrane helix of tumor necrosis factor alpha in trifluorethanol...

New page

'''Unreleased structure'''

The entry 7atb is ON HOLD

Authors: Guschtschin-Schmidt, N., Muhle-Goll, C.

Description: Transmembrane helix of tumor necrosis factor alpha in trifluorethanol, AGALLL mutant
[[Category: Unreleased Structures]]
[[Category: Muhle-Goll, C]]
[[Category: Guschtschin-Schmidt, N]]

7atb - Revision history

OCA at 11:04, 24 December 2020

OCA at 06:39, 9 December 2020

OCA at 05:29, 2 December 2020

OCA: Protected "7atb" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7atb is ON HOLD Authors: Guschtschin-Schmidt, N., Muhle-Goll, C. Description: Transmembrane helix of tumor necrosis factor alpha in trifluorethanol...