7bur - Revision history

OCA at 15:35, 29 November 2023

2023-11-29T15:35:14Z

←Older revision		Revision as of 15:35, 29 November 2023
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	==Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin==		==Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin==
-	<StructureSection load='7bur' size='340' side='right'caption='[[7bur]]' scene=''>	+	<StructureSection load='7bur' size='340' side='right'caption='[[7bur]], [[Resolution\|resolution]] 1.82Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BUR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=7BUR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7bur]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BUR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BUR FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=7bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bur OCA], [~~http~~://pdbe.org/7bur PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=7bur RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/7bur PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=7bur ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.82Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=NAR:NARINGENIN'>NAR</scene>, <scene name='pdbligand=SME:METHIONINE+SULFOXIDE'>SME</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bur OCA], [https://pdbe.org/7bur PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bur RCSB], [https://www.ebi.ac.uk/pdbsum/7bur PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bur ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CHS1_SOYBN CHS1_SOYBN] The primary product of this enzyme is 4,2',4',6'-tetrahydroxychalcone (also termed naringenin-chalcone or chalcone) which can under specific conditions spontaneously isomerize into naringenin.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Isoflavonoid is one of the groups of flavonoids that play pivotal roles in the survival of land plants. Chalcone synthase (CHS), the first enzyme of the isoflavonoid biosynthetic pathway, catalyzes the formation of a common isoflavonoid precursor. We have previously reported that an isozyme of soybean CHS (termed GmCHS1) is a key component of the isoflavonoid metabolon, a protein complex to enhance efficiency of isoflavonoid production. Here, we determined the crystal structure of GmCHS1 as a first step of understanding the metabolon structure, as well as to better understand the catalytic mechanism of GmCHS1. This article is protected by copyright. All rights reserved.
		+
		+	Crystal structure of chalcone synthase, a key enzyme for isoflavonoid biosynthesis in soybean.,Imaizumi R, Mameda R, Takeshita K, Kubo H, Sakai N, Nakata S, Takahashi S, Kataoka K, Yamamoto M, Nakayama T, Yamashita S, Waki T Proteins. 2020 Jul 29. doi: 10.1002/prot.25988. PMID:32725893<ref>PMID:32725893</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7bur" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Chalcone synthase\|Chalcone synthase]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Glycine max]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Imaizumi R]]		[[Category: Imaizumi R]]
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	[[Category: Nakata S]]		[[Category: Nakata S]]
	[[Category: Nakayama T]]		[[Category: Nakayama T]]
		+	[[Category: Sakai N]]
	[[Category: Takahashi S]]		[[Category: Takahashi S]]
	[[Category: Takeshita K]]		[[Category: Takeshita K]]

OCA at 06:24, 19 August 2020

2020-08-19T06:24:35Z

←Older revision		Revision as of 06:24, 19 August 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 7bur ~~is ON HOLD until Paper Publication~~	+	==Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin==
-		+	<StructureSection load='7bur' size='340' side='right'caption='[[7bur]]' scene=''>
-	~~Authors~~: ~~Imaizumi, R~~.~~, Mameda, R~~.~~, Takeshita, K~~.~~, Waki, T~~.~~, Kubo, H~~.~~, Nakata, S~~., ~~Takahashi, S~~., ~~Kataoka, K~~., ~~Yamamoto, M~~., ~~Yamashita, S~~., ~~Nakayama, T~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BUR OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7BUR FirstGlance]. <br>
-	~~Description: Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bur OCA], [http://pdbe.org/7bur PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7bur RCSB], [http://www.ebi.ac.uk/pdbsum/7bur PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7bur ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Waki, T~~]]	+	__TOC__
-	[[Category: ~~Kubo, H~~]]	+	</StructureSection>
-	[[Category: ~~Mameda, R~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Yamashita, S~~]]	+	[[Category: Imaizumi R]]
-	[[Category: ~~Yamamoto, M~~]]	+	[[Category: Kataoka K]]
-	[[Category: Nakayama, T]]	+	[[Category: Kubo H]]
-	[[Category: ~~Kataoka, K~~]]	+	[[Category: Mameda R]]
-	[[Category: ~~Nakata, S~~]]	+	[[Category: Nakata S]]
-	[[Category: ~~Takahashi, S~~]]	+	[[Category: Nakayama T]]
-	[[Category: ~~Takeshita, K~~]]	+	[[Category: Takahashi S]]
-	[[Category: ~~Imaizumi, R~~]]	+	[[Category: Takeshita K]]
		+	[[Category: Waki T]]
		+	[[Category: Yamamoto M]]
		+	[[Category: Yamashita S]]

OCA at 05:23, 3 June 2020

2020-06-03T05:23:49Z

←Older revision		Revision as of 05:23, 3 June 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7bur is ON HOLD	+	The entry 7bur is ON HOLD until Paper Publication

	Authors: Imaizumi, R., Mameda, R., Takeshita, K., Waki, T., Kubo, H., Nakata, S., Takahashi, S., Kataoka, K., Yamamoto, M., Yamashita, S., Nakayama, T.		Authors: Imaizumi, R., Mameda, R., Takeshita, K., Waki, T., Kubo, H., Nakata, S., Takahashi, S., Kataoka, K., Yamamoto, M., Yamashita, S., Nakayama, T.
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	Description: Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin		Description: Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Kataoka, K]]
-	[[Category: Nakata, S]]
	[[Category: Waki, T]]		[[Category: Waki, T]]
	[[Category: Kubo, H]]		[[Category: Kubo, H]]
	[[Category: Mameda, R]]		[[Category: Mameda, R]]
	[[Category: Yamashita, S]]		[[Category: Yamashita, S]]
-	[[Category: Takahashi, S]]
	[[Category: Yamamoto, M]]		[[Category: Yamamoto, M]]
	[[Category: Nakayama, T]]		[[Category: Nakayama, T]]
		+	[[Category: Kataoka, K]]
		+	[[Category: Nakata, S]]
		+	[[Category: Takahashi, S]]
	[[Category: Takeshita, K]]		[[Category: Takeshita, K]]
	[[Category: Imaizumi, R]]		[[Category: Imaizumi, R]]

OCA: Protected "7bur" [edit=sysop:move=sysop]

2020-04-15T05:43:07Z

Protected "7bur" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:43, 15 April 2020

OCA: New page: '''Unreleased structure''' The entry 7bur is ON HOLD Authors: Imaizumi, R., Mameda, R., Takeshita, K., Waki, T., Kubo, H., Nakata, S., Takahashi, S., Kataoka, K., Yamamoto, M., Yamashit...

2020-04-15T05:43:05Z

New page: '''Unreleased structure''' The entry 7bur is ON HOLD Authors: Imaizumi, R., Mameda, R., Takeshita, K., Waki, T., Kubo, H., Nakata, S., Takahashi, S., Kataoka, K., Yamamoto, M., Yamashit...

New page

'''Unreleased structure'''

The entry 7bur is ON HOLD

Authors: Imaizumi, R., Mameda, R., Takeshita, K., Waki, T., Kubo, H., Nakata, S., Takahashi, S., Kataoka, K., Yamamoto, M., Yamashita, S., Nakayama, T.

Description: Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin
[[Category: Unreleased Structures]]
[[Category: Kataoka, K]]
[[Category: Nakata, S]]
[[Category: Waki, T]]
[[Category: Kubo, H]]
[[Category: Mameda, R]]
[[Category: Yamashita, S]]
[[Category: Takahashi, S]]
[[Category: Yamamoto, M]]
[[Category: Nakayama, T]]
[[Category: Takeshita, K]]
[[Category: Imaizumi, R]]