7d7o - Revision history

OCA at 16:27, 29 November 2023

2023-11-29T16:27:58Z

←Older revision		Revision as of 16:27, 29 November 2023
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	==Crystal structure of cystathionine gamma-lyase from Bacillus cereus ATCC 14579==		==Crystal structure of cystathionine gamma-lyase from Bacillus cereus ATCC 14579==
-	<StructureSection load='7d7o' size='340' side='right'caption='[[7d7o]]' scene=''>	+	<StructureSection load='7d7o' size='340' side='right'caption='[[7d7o]], [[Resolution\|resolution]] 1.98Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7D7O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7D7O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7d7o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus_ATCC_14579 Bacillus cereus ATCC 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7D7O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7D7O FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d7o OCA], [https://pdbe.org/7d7o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d7o RCSB], [https://www.ebi.ac.uk/pdbsum/7d7o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d7o ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.98Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d7o OCA], [https://pdbe.org/7d7o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d7o RCSB], [https://www.ebi.ac.uk/pdbsum/7d7o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d7o ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q818A3_BACCR Q818A3_BACCR]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cysteine is a semiessential amino acid and plays an important role in metabolism and protein structure and has also been applied in various industrial fields, such as pharmaceutical, food, cosmetic, and animal feed industries. Metabolic engineering studies have been conducted for the cysteine production through bacterial fermentation, but studies on the cysteine biosynthetic pathway in microorganisms are limited. We report the biochemical characteristics of cystathionine gamma-lyase from Bacillus cereus ATCC 14579 (BcCGL). We also determined the crystal structure of BcCGL in complex with the PLP cofactor and identified the substrate binding mode. We observed that the replacement of the conserved Glu321 residue to alanine showed increased activity by providing wider active site entrance and hydrophobic interaction for the substrate. We suggest that the structural differences of the alpha13-alpha14 region in CGL enzymes might determine the active site conformation.
		+
		+	Structural and Functional Characterization of Cystathionine gamma-lyase from Bacillus cereus ATCC 14579.,Sagong HY, Kim B, Joo S, Kim KJ J Agric Food Chem. 2020 Dec 23;68(51):15267-15274. doi: 10.1021/acs.jafc.0c06503., Epub 2020 Dec 10. PMID:33301683<ref>PMID:33301683</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7d7o" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cystathionine beta-lyase\|Cystathionine beta-lyase]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus cereus ATCC 14579]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Kim B]]		[[Category: Kim B]]
	[[Category: Kim K-J]]		[[Category: Kim K-J]]
	[[Category: Sagong H-Y]]		[[Category: Sagong H-Y]]

OCA at 06:07, 18 August 2021

2021-08-18T06:07:32Z

←Older revision		Revision as of 06:07, 18 August 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7d7o ~~is ON HOLD until Paper Publication~~	+	==Crystal structure of cystathionine gamma-lyase from Bacillus cereus ATCC 14579==
-		+	<StructureSection load='7d7o' size='340' side='right'caption='[[7d7o]]' scene=''>
-	~~Authors~~: ~~Sagong, H~~.-Y., ~~Kim~~, B., ~~Kim~~, K.-J.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7D7O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7D7O FirstGlance]. <br>
-	~~Description: Crystal structure of cystathionine gamma-lyase from Bacillus cereus ATCC 14579~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d7o OCA], [https://pdbe.org/7d7o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d7o RCSB], [https://www.ebi.ac.uk/pdbsum/7d7o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d7o ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Kim~~, K.-J~~]]	+	__TOC__
-	[[Category: Kim~~, B~~]]	+	</StructureSection>
-	[[Category: Sagong, H.-Y]]	+	[[Category: Large Structures]]
		+	[[Category: Kim B]]
		+	[[Category: Kim K-J]]
		+	[[Category: Sagong H-Y]]

OCA at 06:43, 21 October 2020

2020-10-21T06:43:32Z

←Older revision		Revision as of 06:43, 21 October 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7d7o is ON HOLD	+	The entry 7d7o is ON HOLD until Paper Publication

	Authors: Sagong, H.-Y., Kim, B., Kim, K.-J.		Authors: Sagong, H.-Y., Kim, B., Kim, K.-J.

OCA: Protected "7d7o" [edit=sysop:move=sysop]

2020-10-14T04:12:05Z

Protected "7d7o" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:12, 14 October 2020

OCA: New page: '''Unreleased structure''' The entry 7d7o is ON HOLD Authors: Sagong, H.-Y., Kim, B., Kim, K.-J. Description: Crystal structure of cystathionine gamma-lyase from Bacillus cereus ATCC 1...

2020-10-14T04:12:04Z

New page: '''Unreleased structure''' The entry 7d7o is ON HOLD Authors: Sagong, H.-Y., Kim, B., Kim, K.-J. Description: Crystal structure of cystathionine gamma-lyase from Bacillus cereus ATCC 1...

New page

'''Unreleased structure'''

The entry 7d7o is ON HOLD

Authors: Sagong, H.-Y., Kim, B., Kim, K.-J.

Description: Crystal structure of cystathionine gamma-lyase from Bacillus cereus ATCC 14579
[[Category: Unreleased Structures]]
[[Category: Kim, K.-J]]
[[Category: Kim, B]]
[[Category: Sagong, H.-Y]]