7dkn - Revision history

OCA at 16:35, 29 November 2023

2023-11-29T16:35:25Z

←Older revision		Revision as of 16:35, 29 November 2023
Line 3:		Line 3:
	<StructureSection load='7dkn' size='340' side='right'caption='[[7dkn]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='7dkn' size='340' side='right'caption='[[7dkn]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7dkn]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DKN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DKN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7dkn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DKN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DKN FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.79Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>[https://en.wikipedia.org/wiki/Methylated-DNA--[protein]-cysteine_S-methyltransferase Methylated-DNA--[protein]-cysteine S-methyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.63 2.1.1.63] </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dkn OCA], [https://pdbe.org/7dkn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dkn RCSB], [https://www.ebi.ac.uk/pdbsum/7dkn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dkn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dkn OCA], [https://pdbe.org/7dkn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dkn RCSB], [https://www.ebi.ac.uk/pdbsum/7dkn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dkn ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/OGT_SULTO OGT_SULTO]] Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated (By similarity).	+	[https://www.uniprot.org/uniprot/OGT_SULTO OGT_SULTO] Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated (By similarity).
		+
		+	==See Also==
		+	*[[DNA methyltransferase 3D structures\|DNA methyltransferase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Iizuka, Y]]	+	[[Category: Sulfurisphaera tokodaii str. 7]]
-	[[Category: Kikuchi, M]]	+	[[Category: Iizuka Y]]
-	[[Category: Tsunoda, M]]	+	[[Category: Kikuchi M]]
-	[[Category: Yamauchi, T]]	+	[[Category: Tsunoda M]]
-	~~[[Category: Methyltransferase]]~~	+	[[Category: Yamauchi T]]
-	~~[[Category: Transferase~~]]	+

OCA at 16:56, 15 December 2021

2021-12-15T16:56:26Z

←Older revision		Revision as of 16:56, 15 December 2021
Line 1:		Line 1:

	==Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase==		==Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase==
-	<StructureSection load='7dkn' size='340' side='right'caption='[[7dkn]]' scene=''>	+	<StructureSection load='7dkn' size='340' side='right'caption='[[7dkn]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DKN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DKN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7dkn]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DKN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DKN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dkn OCA], [https://pdbe.org/7dkn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dkn RCSB], [https://www.ebi.ac.uk/pdbsum/7dkn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dkn ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Methylated-DNA--[protein]-cysteine_S-methyltransferase Methylated-DNA--[protein]-cysteine S-methyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.63 2.1.1.63] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dkn OCA], [https://pdbe.org/7dkn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dkn RCSB], [https://www.ebi.ac.uk/pdbsum/7dkn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dkn ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/OGT_SULTO OGT_SULTO]] Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated (By similarity).
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Iizuka Y]]	+	[[Category: Iizuka, Y]]
-	[[Category: Kikuchi M]]	+	[[Category: Kikuchi, M]]
-	[[Category: Tsunoda M]]	+	[[Category: Tsunoda, M]]
-	[[Category: Yamauchi T]]	+	[[Category: Yamauchi, T]]
		+	[[Category: Methyltransferase]]
		+	[[Category: Transferase]]

OCA at 06:18, 1 December 2021

2021-12-01T06:18:02Z

←Older revision		Revision as of 06:18, 1 December 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7dkn ~~is ON HOLD~~	+	==Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase==
-		+	<StructureSection load='7dkn' size='340' side='right'caption='[[7dkn]]' scene=''>
-	~~Authors~~: ~~Kikuchi~~, M., ~~Yamauchi~~, T., ~~Iizuka, Y~~., ~~Tsunoda, M~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DKN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DKN FirstGlance]. <br>
-	~~Description: Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dkn OCA], [https://pdbe.org/7dkn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dkn RCSB], [https://www.ebi.ac.uk/pdbsum/7dkn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dkn ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Yamauchi, T~~]]	+	__TOC__
-	[[Category: Kikuchi, M]]	+	</StructureSection>
-	[[Category: Tsunoda, M]]	+	[[Category: Large Structures]]
-	[[Category: ~~Iizuka, Y~~]]	+	[[Category: Iizuka Y]]
		+	[[Category: Kikuchi M]]
		+	[[Category: Tsunoda M]]
		+	[[Category: Yamauchi T]]

OCA: Protected "7dkn" [edit=sysop:move=sysop]

2020-12-02T05:43:36Z

Protected "7dkn" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:43, 2 December 2020

OCA: New page: '''Unreleased structure''' The entry 7dkn is ON HOLD Authors: Kikuchi, M., Yamauchi, T., Iizuka, Y., Tsunoda, M. Description: Crystal structure of Sulfurisphaera tokodaii O6-methylguan...

2020-12-02T05:43:35Z

New page: '''Unreleased structure''' The entry 7dkn is ON HOLD Authors: Kikuchi, M., Yamauchi, T., Iizuka, Y., Tsunoda, M. Description: Crystal structure of Sulfurisphaera tokodaii O6-methylguan...

New page

'''Unreleased structure'''

The entry 7dkn is ON HOLD

Authors: Kikuchi, M., Yamauchi, T., Iizuka, Y., Tsunoda, M.

Description: Crystal structure of Sulfurisphaera tokodaii O6-methylguanine methyltransferase
[[Category: Unreleased Structures]]
[[Category: Yamauchi, T]]
[[Category: Kikuchi, M]]
[[Category: Tsunoda, M]]
[[Category: Iizuka, Y]]