7e3e - Revision history

OCA at 16:45, 29 November 2023

2023-11-29T16:45:38Z

←Older revision		Revision as of 16:45, 29 November 2023
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	==Crystal structure of Trypanosoma brucei cathepsin B R91C/T223C mutant==		==Crystal structure of Trypanosoma brucei cathepsin B R91C/T223C mutant==
-	<StructureSection load='7e3e' size='340' side='right'caption='[[7e3e]]' scene=''>	+	<StructureSection load='7e3e' size='340' side='right'caption='[[7e3e]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E3E FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7e3e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei_brucei_TREU927 Trypanosoma brucei brucei TREU927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E3E FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e3e OCA], [https://pdbe.org/7e3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e3e RCSB], [https://www.ebi.ac.uk/pdbsum/7e3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e3e ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e3e OCA], [https://pdbe.org/7e3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e3e RCSB], [https://www.ebi.ac.uk/pdbsum/7e3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e3e ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/D6XHE1_TRYB2 D6XHE1_TRYB2]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein assemblies can be designed for development of nano-bio materials. This has been achieved by modulating protein-protein interactions. However, fabrication of highly ordered protein assemblies remains challenging. Protein crystals, which have highly ordered arrangements of protein molecules, provide useful source matrices for synthesizing artificial protein assemblies. Here, we describe construction of a supramolecular filament structure by engineering covalent and non-covalent interactions in a protein crystal. Performing in-cell crystallization of Trypanosoma brucei cysteine protease cathepsin B (TbCatB), we achieved a precise arrangement of protein molecules while suppressing random aggregation due to disulfide bonds. We succeeded in synthesizing bundled filament from the crystals by autoxidation of cysteinyl thiols after the isolation of the crystals from living cells.
		+
		+	Design of an In-Cell Protein Crystal for the Environmentally Responsive Construction of a Supramolecular Filament.,Abe S, Pham TT, Negishi H, Yamashita K, Hirata K, Ueno T Angew Chem Int Ed Engl. 2021 May 25;60(22):12341-12345. doi:, 10.1002/anie.202102039. Epub 2021 Apr 23. PMID:33759310<ref>PMID:33759310</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7e3e" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cathepsin 3D structures\|Cathepsin 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Trypanosoma brucei brucei TREU927]]
	[[Category: Abe S]]		[[Category: Abe S]]
	[[Category: Hirata K]]		[[Category: Hirata K]]

OCA at 16:46, 15 December 2021

2021-12-15T16:46:46Z

←Older revision		Revision as of 16:46, 15 December 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7e3e ~~is ON HOLD until Feb 08 2023~~	+	==Crystal structure of Trypanosoma brucei cathepsin B R91C/T223C mutant==
-		+	<StructureSection load='7e3e' size='340' side='right'caption='[[7e3e]]' scene=''>
-	~~Authors~~: ~~Abe, S~~., ~~Pham, T~~.T., ~~Negishi, H~~., ~~Yamashita, K~~., ~~Hirata, K~~., ~~Ueno, T~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E3E FirstGlance]. <br>
-	~~Description: Crystal structure of Trypanosoma brucei cathepsin B R91C~~/~~T223C mutant~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e3e OCA], [https://pdbe.org/7e3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e3e RCSB], [https://www.ebi.ac.uk/pdbsum/7e3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e3e ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Abe, S]]	+	__TOC__
-	[[Category: ~~Ueno, T~~]]	+	</StructureSection>
-	[[Category: ~~Pham, T.T~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Yamashita, K~~]]	+	[[Category: Abe S]]
-	[[Category: ~~Negishi, H~~]]	+	[[Category: Hirata K]]
-	[[Category: ~~Hirata,~~ K]]	+	[[Category: Negishi H]]
		+	[[Category: Pham TT]]
		+	[[Category: Ueno T]]
		+	[[Category: Yamashita K]]

OCA at 05:33, 24 February 2021

2021-02-24T05:33:01Z

←Older revision		Revision as of 05:33, 24 February 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7e3e is ON HOLD	+	The entry 7e3e is ON HOLD until Feb 08 2023

	Authors: Abe, S., Pham, T.T., Negishi, H., Yamashita, K., Hirata, K., Ueno, T.		Authors: Abe, S., Pham, T.T., Negishi, H., Yamashita, K., Hirata, K., Ueno, T.
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	Description: Crystal structure of Trypanosoma brucei cathepsin B R91C/T223C mutant		Description: Crystal structure of Trypanosoma brucei cathepsin B R91C/T223C mutant
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Abe, S]]
		+	[[Category: Ueno, T]]
	[[Category: Pham, T.T]]		[[Category: Pham, T.T]]
	[[Category: Yamashita, K]]		[[Category: Yamashita, K]]
	[[Category: Negishi, H]]		[[Category: Negishi, H]]
-	[[Category: Abe, S]]
	[[Category: Hirata, K]]		[[Category: Hirata, K]]
-	[[Category: Ueno, T]]

OCA: Protected "7e3e" [edit=sysop:move=sysop]

2021-02-17T08:37:54Z

Protected "7e3e" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:37, 17 February 2021

OCA: New page: '''Unreleased structure''' The entry 7e3e is ON HOLD Authors: Abe, S., Pham, T.T., Negishi, H., Yamashita, K., Hirata, K., Ueno, T. Description: Crystal structure of Trypanosoma brucei...

2021-02-17T08:37:53Z

New page: '''Unreleased structure''' The entry 7e3e is ON HOLD Authors: Abe, S., Pham, T.T., Negishi, H., Yamashita, K., Hirata, K., Ueno, T. Description: Crystal structure of Trypanosoma brucei...

New page

'''Unreleased structure'''

The entry 7e3e is ON HOLD

Authors: Abe, S., Pham, T.T., Negishi, H., Yamashita, K., Hirata, K., Ueno, T.

Description: Crystal structure of Trypanosoma brucei cathepsin B R91C/T223C mutant
[[Category: Unreleased Structures]]
[[Category: Pham, T.T]]
[[Category: Yamashita, K]]
[[Category: Negishi, H]]
[[Category: Abe, S]]
[[Category: Hirata, K]]
[[Category: Ueno, T]]