OCA at 16:52, 29 November 2023

2023-11-29T16:52:22Z

←Older revision		Revision as of 16:52, 29 November 2023
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-	====	+	==Crystal structure of the complex between the C-terminal domain of mouse MUTYH and human PCNA==
-	<StructureSection load='7efa' size='340' side='right'caption='[[7efa]]' scene=''>	+	<StructureSection load='7efa' size='340' side='right'caption='[[7efa]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7efa]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EFA FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7efa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7efa OCA], [https://pdbe.org/7efa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7efa RCSB], [https://www.ebi.ac.uk/pdbsum/7efa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7efa ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7efa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7efa OCA], [https://pdbe.org/7efa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7efa RCSB], [https://www.ebi.ac.uk/pdbsum/7efa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7efa ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PCNA_HUMAN PCNA_HUMAN] Auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand. Induces a robust stimulatory effect on the 3'-5' exonuclease and 3'-phosphodiesterase, but not apurinic-apyrimidinic (AP) endonuclease, APEX2 activities. Has to be loaded onto DNA in order to be able to stimulate APEX2. Plays a key role in DNA damage response (DDR) by being conveniently positioned at the replication fork to coordinate DNA replication with DNA repair and DNA damage tolerance pathways. Acts as a loading platform to recruit DDR proteins that allow completion of DNA replication after DNA damage and promote postreplication repair: Monoubiquitinated PCNA leads to recruitment of translesion (TLS) polymerases, while 'Lys-63'-linked polyubiquitination of PCNA is involved in error-free pathway and employs recombination mechanisms to synthesize across the lesion.<ref>PMID:19443450</ref> <ref>PMID:18719106</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Mammalian MutY homologue (MUTYH) is an adenine DNA glycosylase that excises adenine inserted opposite 8-oxoguanine (8-oxoG). The inherited variations in human MUTYH gene are known to cause MUTYH-associated polyposis (MAP), which is associated with colorectal cancer. MUTYH is involved in base excision repair (BER) with proliferating cell nuclear antigen (PCNA) in DNA replication, which is unique and critical for effective mutation-avoidance. It is also reported that MUTYH has a Zn-binding motif in a unique interdomain connector (IDC) region, which interacts with Rad9-Rad1-Hus1 complex (9-1-1) in DNA damage response, and with apurinic/apyrimidinic endonuclease 1 (APE1) in BER. However, the structural basis for the BER pathway by MUTYH and its interacting proteins is unclear. Here, we determined the crystal structures of complexes between mouse MUTYH and DNA, and between the C-terminal domain of mouse MUTYH and human PCNA. The structures elucidated the repair mechanism for the A:8-oxoG mispair including DNA replication-coupled repair process involving MUTYH and PCNA. The Zn-binding motif was revealed to comprise one histidine and three cysteine residues. The IDC, including the Zn-binding motif, is exposed on the MUTYH surface, suggesting its interaction modes with 9-1-1 and APE1, respectively. The structure of MUTYH explains how MAP mutations perturb MUTYH function.
		+
		+	Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer.,Nakamura T, Okabe K, Hirayama S, Chirifu M, Ikemizu S, Morioka H, Nakabeppu Y, Yamagata Y Nucleic Acids Res. 2021 Jul 9;49(12):7154-7163. doi: 10.1093/nar/gkab492. PMID:34142156<ref>PMID:34142156</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7efa" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[DNA glycosylase 3D structures\|DNA glycosylase 3D structures]]
		+	*[[Proliferating cell nuclear antigen 3D structures\|Proliferating cell nuclear antigen 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Mus musculus]]
		+	[[Category: Nakabeppu Y]]
		+	[[Category: Nakamura T]]
		+	[[Category: Yamagata Y]]

OCA at 07:31, 25 June 2021

2021-06-25T07:31:20Z

←Older revision		Revision as of 07:31, 25 June 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7efa ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7efa' size='340' side='right'caption='[[7efa]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7efa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7efa OCA], [https://pdbe.org/7efa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7efa RCSB], [https://www.ebi.ac.uk/pdbsum/7efa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7efa ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA: Protected "7efa" [edit=sysop:move=sysop]

2021-03-31T09:16:24Z

Protected "7efa" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:16, 31 March 2021

OCA: New page: '''Unreleased structure''' The entry 7efa is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2021-03-31T09:16:23Z

New page: '''Unreleased structure''' The entry 7efa is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7efa is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]

7efa - Revision history

OCA at 16:52, 29 November 2023

OCA at 07:31, 25 June 2021

OCA: Protected "7efa" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7efa is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures