7epn - Revision history

OCA at 16:59, 29 November 2023

2023-11-29T16:59:28Z

←Older revision		Revision as of 16:59, 29 November 2023
Line 1:		Line 1:

	==Ketosteroid Isomerase KSI native==		==Ketosteroid Isomerase KSI native==
-	<StructureSection load='7epn' size='340' side='right'caption='[[7epn]]' scene=''>	+	<StructureSection load='7epn' size='340' side='right'caption='[[7epn]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EPN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EPN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7epn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycolicibacterium_smegmatis_MC2_155 Mycolicibacterium smegmatis MC2 155]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EPN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EPN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7epn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7epn OCA], [https://pdbe.org/7epn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7epn RCSB], [https://www.ebi.ac.uk/pdbsum/7epn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7epn ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7epn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7epn OCA], [https://pdbe.org/7epn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7epn RCSB], [https://www.ebi.ac.uk/pdbsum/7epn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7epn ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0R7C6_MYCS2 A0R7C6_MYCS2]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The Kemp elimination reaction, involving the ring-opening of benzoxazole and its derivatives under the action of natural enzymes or chemical catalysts, has been of interest to researchers since its discovery. Because this reaction does not exist in all currently known metabolic pathways, the computational design of Kemp eliminases has provided valuable insights into principles of enzymatic catalysis. However, it was discovered that the naturally occurring promiscuous enzymes ydbC, xapA and ketosteroid isomerase also can catalyze Kemp elimination. Here, we report the crystal structure of ketosteroid isomerase (KSI) from Mycobacterium smegmatis MC2 155. MsKSI crystallizes in the P212121 space group with two molecules in an asymmetric unit, and ultracentrifugation data confirms that it forms a stable dimer in solution, consistent with the 1.9 A-resolution structure. Our assays confirm that MsKSI accelerates the Kemp elimination of 5-nitrobenzoxazole (5NBI) with an optimal pH of 5.5. A 2.35 A resolution crystal structure of the MsKSI-5NBI complex reveals that the substrate 5NBI is bound in the active pocket of the enzyme composed of hydrophobic residues. In addition, the Glu127 residue is proposed to play an important role as a general base in proton transfer and breaking weak O-N bonds to open the five-membered ring. This work provides a starting point for exploring the artificial modification of MsKSI using the natural enzyme as the backbone.
		+
		+	Structural characterization and Kemp eliminase activity of the Mycobacterium smegmatis Ketosteroid Isomerase.,Liang Y, Li W, Liang H, Lou X, Liu R, Zhang Q, Bartlam M Biochem Biophys Res Commun. 2021 Jun 30;560:159-164. doi:, 10.1016/j.bbrc.2021.05.007. Epub 2021 May 13. PMID:33992958<ref>PMID:33992958</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7epn" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ketosteroid Isomerase\|Ketosteroid Isomerase]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Mycolicibacterium smegmatis MC2 155]]
	[[Category: Bartlam M]]		[[Category: Bartlam M]]
	[[Category: Liang Y]]		[[Category: Liang Y]]
	[[Category: Zhang Q]]		[[Category: Zhang Q]]

OCA at 15:25, 22 December 2021

2021-12-22T15:25:22Z

←Older revision		Revision as of 15:25, 22 December 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7epn ~~is ON HOLD until Paper Publication~~	+	==Ketosteroid Isomerase KSI native==
-		+	<StructureSection load='7epn' size='340' side='right'caption='[[7epn]]' scene=''>
-	~~Authors~~: ~~Liang~~, Y., ~~Zhang~~, Q., ~~Bartlam~~, M.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EPN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EPN FirstGlance]. <br>
-	~~Description: Ketosteroid Isomerase KSI native~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7epn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7epn OCA], [https://pdbe.org/7epn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7epn RCSB], [https://www.ebi.ac.uk/pdbsum/7epn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7epn ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Liang, Y~~]]	+	__TOC__
-	[[Category: ~~Bartlam, M~~]]	+	</StructureSection>
-	[[Category: Zhang, Q]]	+	[[Category: Large Structures]]
		+	[[Category: Bartlam M]]
		+	[[Category: Liang Y]]
		+	[[Category: Zhang Q]]

OCA at 08:03, 12 May 2021

2021-05-12T08:03:29Z

←Older revision		Revision as of 08:03, 12 May 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7epn is ON HOLD	+	The entry 7epn is ON HOLD until Paper Publication

	Authors: Liang, Y., Zhang, Q., Bartlam, M.		Authors: Liang, Y., Zhang, Q., Bartlam, M.

OCA: Protected "7epn" [edit=sysop:move=sysop]

2021-05-05T07:19:28Z

Protected "7epn" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:19, 5 May 2021

OCA: New page: '''Unreleased structure''' The entry 7epn is ON HOLD Authors: Liang, Y., Zhang, Q., Bartlam, M. Description: Ketosteroid Isomerase KSI native Category: Unreleased Structures [[Cate...

2021-05-05T07:19:27Z

New page: '''Unreleased structure''' The entry 7epn is ON HOLD Authors: Liang, Y., Zhang, Q., Bartlam, M. Description: Ketosteroid Isomerase KSI native Category: Unreleased Structures [[Cate...

New page

'''Unreleased structure'''

The entry 7epn is ON HOLD

Authors: Liang, Y., Zhang, Q., Bartlam, M.

Description: Ketosteroid Isomerase KSI native
[[Category: Unreleased Structures]]
[[Category: Liang, Y]]
[[Category: Bartlam, M]]
[[Category: Zhang, Q]]