7jur - Revision history

OCA at 15:11, 18 October 2023

2023-10-18T15:11:44Z

←Older revision		Revision as of 15:11, 18 October 2023
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-	====	+	==Crystal Structure of KSR2:MEK1 in complex with AMP-PNP, and allosteric MEK inhibitor Trametinib==
-	<StructureSection load='7jur' size='340' side='right'caption='[[7jur]]' scene=''>	+	<StructureSection load='7jur' size='340' side='right'caption='[[7jur]], [[Resolution\|resolution]] 2.82Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7jur]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JUR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JUR FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=7jur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jur OCA], [~~http~~://pdbe.org/7jur PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=7jur RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/7jur PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=7jur ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.82Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=QOM:Trametinib'>QOM</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jur OCA], [https://pdbe.org/7jur PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jur RCSB], [https://www.ebi.ac.uk/pdbsum/7jur PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jur ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/KSR2_HUMAN KSR2_HUMAN]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The MAPK/ERK kinase MEK is a shared effector of the frequent cancer drivers KRAS and BRAF that has long been pursued as a drug target in oncology(1), and more recently in immunotherapy(2,3) and aging(4). However, many MEK inhibitors (MEKi) are limited due to on-target toxicities(5-7) and drug resistance(8-10). Accordingly, a molecular understanding of the structure and function of MEK within physiological complexes could provide a template for the design of safer and more effective therapies. Here we report X-ray crystal structures of MEK bound to the scaffold KSR (kinase suppressor of RAS) with various MEKi, including the clinical drug trametinib. The structures reveal an unexpected mode of binding in which trametinib directly engages KSR at the MEK interface. Through complexation, KSR remodels the prototypical MEKi allosteric pocket thereby impacting binding and kinetics, including drug residence time. Moreover, trametinib binds KSR-MEK but disrupts the related RAF-MEK complex through a mechanism that exploits evolutionarily conserved interface residues that distinguish these subcomplexes. Based on these insights we created trametiglue, which limits adaptive resistance to MEKi through enhanced interfacial binding. Together, our results reveal the plasticity of an interface pocket within MEK subcomplexes that has implications for the design of next-generation drugs targeting the RAS pathway.
		+
		+	Structural basis for the action of the drug trametinib at KSR-bound MEK.,Khan ZM, Real AM, Marsiglia WM, Chow A, Duffy ME, Yerabolu JR, Scopton AP, Dar AC Nature. 2020 Sep 14. pii: 10.1038/s41586-020-2760-4. doi:, 10.1038/s41586-020-2760-4. PMID:32927473<ref>PMID:32927473</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7jur" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Mitogen-activated protein kinase kinase 3D structures\|Mitogen-activated protein kinase kinase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Oryctolagus cuniculus]]
		+	[[Category: Dar AC]]
		+	[[Category: Khan ZM]]

OCA at 07:15, 30 September 2020

2020-09-30T07:15:18Z

←Older revision		Revision as of 07:15, 30 September 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 7jur ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7jur' size='340' side='right'caption='[[7jur]]' scene=''>
-	~~Authors~~: ~~Khan, Z~~.M.~~, Dar, A~~.C.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~: ~~Crystal Structure of KSR2~~:~~MEK1 in complex with AMP~~-~~PNP~~, ~~and allosteric MEK inhibitor Trametinib~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7jur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jur OCA], [http://pdbe.org/7jur PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7jur RCSB], [http://www.ebi.ac.uk/pdbsum/7jur PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7jur ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: ~~Dar, A.C~~]]	+	__TOC__
-	[[Category: ~~Khan,~~ Z.M]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 09:06, 23 September 2020

2020-09-23T09:06:38Z

←Older revision		Revision as of 09:06, 23 September 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7jur is ON HOLD	+	The entry 7jur is ON HOLD until Paper Publication

	Authors: Khan, Z.M., Dar, A.C.		Authors: Khan, Z.M., Dar, A.C.

OCA: Protected "7jur" [edit=sysop:move=sysop]

2020-08-26T09:43:55Z

Protected "7jur" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:43, 26 August 2020

OCA: New page: '''Unreleased structure''' The entry 7jur is ON HOLD Authors: Khan, Z.M., Dar, A.C. Description: Crystal Structure of KSR2:MEK1 in complex with AMP-PNP, and allosteric MEK inhibitor Tr...

2020-08-26T09:43:53Z

New page: '''Unreleased structure''' The entry 7jur is ON HOLD Authors: Khan, Z.M., Dar, A.C. Description: Crystal Structure of KSR2:MEK1 in complex with AMP-PNP, and allosteric MEK inhibitor Tr...

New page

'''Unreleased structure'''

The entry 7jur is ON HOLD

Authors: Khan, Z.M., Dar, A.C.

Description: Crystal Structure of KSR2:MEK1 in complex with AMP-PNP, and allosteric MEK inhibitor Trametinib
[[Category: Unreleased Structures]]
[[Category: Dar, A.C]]
[[Category: Khan, Z.M]]