OCA at 15:25, 18 October 2023

2023-10-18T15:25:16Z

←Older revision		Revision as of 15:25, 18 October 2023
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-	====	+	==Mouse GITR-GITRL complex==
-	<StructureSection load='7khx' size='340' side='right'caption='[[7khx]]' scene=''>	+	<StructureSection load='7khx' size='340' side='right'caption='[[7khx]], [[Resolution\|resolution]] 3.21Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7khx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7KHX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7KHX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7khx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7khx OCA], [https://pdbe.org/7khx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7khx RCSB], [https://www.ebi.ac.uk/pdbsum/7khx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7khx ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.2056985Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7khx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7khx OCA], [https://pdbe.org/7khx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7khx RCSB], [https://www.ebi.ac.uk/pdbsum/7khx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7khx ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TNF18_MOUSE TNF18_MOUSE] Cytokine that binds to TNFRSF18/AITR/GITR (PubMed:14521928, PubMed:14647196). Regulates T-cell responses (PubMed:14647196). Can function as costimulator and lower the threshold for T-cell activation and T-cell proliferation (PubMed:14608036, PubMed:15128759). Important for interactions between activated T-lymphocytes and endothelial cells. Mediates activation of NF-kappa-B (PubMed:14521928, PubMed:14647196, PubMed:18178614). Triggers increased phosphorylation of STAT1 and up-regulates expression of VCAM1 and ICAM1 (By similarity). Promotes leukocyte adhesion to endothelial cells (PubMed:23892569). Regulates migration of monocytes from the splenic reservoir to sites of inflammation (PubMed:24107315).[UniProtKB:Q9UNG2]<ref>PMID:14521928</ref> <ref>PMID:14608036</ref> <ref>PMID:14647196</ref> <ref>PMID:15128759</ref> <ref>PMID:18178614</ref> <ref>PMID:23892569</ref> <ref>PMID:24107315</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Glucocorticoid-induced tumor necrosis factor receptor-related protein (GITR) and GITR ligand (GITRL) are members of the tumor necrosis superfamily that play a role in immune cell signaling, activation, and survival. GITR is a therapeutic target for directly activating effector CD4 and CD8 T cells, or depleting GITR-expressing regulatory T cells (Tregs), thereby promoting anti-tumor immune responses. GITR activation through its native ligand is important for understanding immune signaling, but GITR structure has not been reported. Here we present structures of human and mouse GITR receptors bound to their cognate ligands. Both species share a receptor-ligand interface and receptor-receptor interface; the unique C-terminal receptor-receptor enables higher order structures on the membrane. Human GITR-GITRL has potential to form a hexameric network of membrane complexes, while murine GITR-GITRL complex forms a linear chain due to dimeric interactions. Mutations at the receptor-receptor interface in human GITR reduce cell signaling with in vitro ligand binding assays and minimize higher order membrane structures when bound by fluorescently labeled ligand in cell imaging experiments.
		+
		+	Structures of mouse and human GITR-GITRL complexes reveal unique TNF superfamily interactions.,Wang F, Chau B, West SM, Kimberlin CR, Cao F, Schwarz F, Aguilar B, Han M, Morishige W, Bee C, Dollinger G, Rajpal A, Strop P Nat Commun. 2021 Mar 2;12(1):1378. doi: 10.1038/s41467-021-21563-z. PMID:33654081<ref>PMID:33654081</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7khx" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Tumor necrosis factor ligand superfamily 3D structures\|Tumor necrosis factor ligand superfamily 3D structures]]
		+	*[[Tumor necrosis factor receptor 3D structures\|Tumor necrosis factor receptor 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Mus musculus]]
		+	[[Category: Chau B]]
		+	[[Category: Strop P]]
		+	[[Category: Wang F]]
		+	[[Category: West SM]]

OCA at 14:46, 3 March 2021

2021-03-03T14:46:26Z

←Older revision		Revision as of 14:46, 3 March 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7khx ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7khx' size='340' side='right'caption='[[7khx]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7khx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7khx OCA], [https://pdbe.org/7khx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7khx RCSB], [https://www.ebi.ac.uk/pdbsum/7khx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7khx ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 07:59, 24 December 2020

2020-12-24T07:59:14Z

←Older revision		Revision as of 07:59, 24 December 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7khx is ON HOLD	+	The entry 7khx is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7khx" [edit=sysop:move=sysop]

2020-10-28T19:13:08Z

Protected "7khx" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:13, 28 October 2020

OCA: New page: '''Unreleased structure''' The entry 7khx is ON HOLD Authors: Description: Category: Unreleased Structures

2020-10-28T19:13:07Z

New page: '''Unreleased structure''' The entry 7khx is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7khx is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7khx - Revision history

OCA at 15:25, 18 October 2023

OCA at 14:46, 3 March 2021

OCA at 07:59, 24 December 2020

OCA: Protected "7khx" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7khx is ON HOLD Authors: Description: Category: Unreleased Structures