OCA at 15:33, 18 October 2023

2023-10-18T15:33:15Z

←Older revision		Revision as of 15:33, 18 October 2023
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-	====	+	==Crystal structure of the CD27:CD70 co-stimulatory complex==
-	<StructureSection load='7kx0' size='340' side='right'caption='[[7kx0]]' scene=''>	+	<StructureSection load='7kx0' size='340' side='right'caption='[[7kx0]], [[Resolution\|resolution]] 2.69Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7kx0]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7KX0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7KX0 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7kx0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kx0 OCA], [https://pdbe.org/7kx0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7kx0 RCSB], [https://www.ebi.ac.uk/pdbsum/7kx0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7kx0 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.69Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7kx0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kx0 OCA], [https://pdbe.org/7kx0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7kx0 RCSB], [https://www.ebi.ac.uk/pdbsum/7kx0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7kx0 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Disease ==
		+	[https://www.uniprot.org/uniprot/CD70_HUMAN CD70_HUMAN] Combined immunodeficiency due to CD70 deficiency. The disease is caused by variants affecting the gene represented in this entry.
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CD70_HUMAN CD70_HUMAN] Cytokine which is the ligand for CD27. The CD70-CD27 pathway plays an important role in the generation and maintenance of T cell immunity, in particular during antiviral responses. Upon CD27 binding, induces the proliferation of costimulated T-cells and enhances the generation of cytolytic T-cells.<ref>PMID:28011863</ref> <ref>PMID:28011864</ref> <ref>PMID:8120384</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	CD27 is a tumor necrosis factor (TNF) receptor, which stimulates lymphocytes and promotes their differentiation upon activation by TNF ligand CD70. Activation of the CD27 receptor provides a costimulatory signal to promote T cell, B cell, and NK cell activity to facilitate antitumor and anti-infection immunity. Aberrant increased and focused expression of CD70 on many tumor cells renders CD70 an attractive therapeutic target for direct tumor killing. However, despite their use as drug targets to treat cancers, the molecular basis and atomic details of CD27 and CD70 interaction remain elusive. Here we report the crystal structure of human CD27 in complex with human CD70. Analysis of our structure shows that CD70 adopts a classical TNF ligand homotrimeric assembly to engage CD27 receptors in a 3:3 stoichiometry. By combining structural and rational mutagenesis data with reported disease-correlated mutations, we identified the key amino acid residues of CD27 and CD70 that control this interaction. We also report increased potency for plate-bound CD70 constructs compared with solution-phase ligand in a functional activity to stimulate T-cells in vitro. These findings offer new mechanistic insight into this critical costimulatory interaction.
		+
		+	Structural delineation and phase-dependent activation of the costimulatory CD27:CD70 complex.,Liu W, Maben Z, Wang C, Lindquist KC, Li M, Rayannavar V, Lopez Armenta I, Nager A, Pascua E, Dominik PK, Oyen D, Wang H, Roach RC, Allan CM, Mosyak L, Chaparro-Riggers J J Biol Chem. 2021 Oct;297(4):101102. doi: 10.1016/j.jbc.2021.101102. Epub 2021 , Aug 20. PMID:34419446<ref>PMID:34419446</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7kx0" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Z-~~disk~~]]	+	[[Category: Chaparro-Riggers J]]
		+	[[Category: Liu W]]
		+	[[Category: Maben Z]]
		+	[[Category: Mosyak L]]

OCA at 08:57, 8 September 2021

2021-09-08T08:57:55Z

←Older revision		Revision as of 08:57, 8 September 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7kx0 ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7kx0' size='340' side='right'caption='[[7kx0]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7kx0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kx0 OCA], [https://pdbe.org/7kx0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7kx0 RCSB], [https://www.ebi.ac.uk/pdbsum/7kx0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7kx0 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 09:24, 3 February 2021

2021-02-03T09:24:38Z

←Older revision		Revision as of 09:24, 3 February 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7kx0 is ON HOLD	+	The entry 7kx0 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7kx0" [edit=sysop:move=sysop]

2020-12-09T05:18:18Z

Protected "7kx0" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:18, 9 December 2020

OCA: New page: '''Unreleased structure''' The entry 7kx0 is ON HOLD Authors: Description: Category: Unreleased Structures

2020-12-09T05:18:17Z

New page: '''Unreleased structure''' The entry 7kx0 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7kx0 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7kx0 - Revision history

OCA at 15:33, 18 October 2023

OCA at 08:57, 8 September 2021

OCA at 09:24, 3 February 2021

OCA: Protected "7kx0" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7kx0 is ON HOLD Authors: Description: Category: Unreleased Structures