7llq - Revision history

OCA at 15:53, 18 October 2023

2023-10-18T15:53:28Z

←Older revision		Revision as of 15:53, 18 October 2023
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	==Substrate-dependent divergence of leukotriene A4 hydrolase aminopeptidase activity==		==Substrate-dependent divergence of leukotriene A4 hydrolase aminopeptidase activity==
-	<StructureSection load='7llq' size='340' side='right'caption='[[7llq]]' scene=''>	+	<StructureSection load='7llq' size='340' side='right'caption='[[7llq]], [[Resolution\|resolution]] 2.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LLQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LLQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7llq]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LLQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LLQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7llq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7llq OCA], [https://pdbe.org/7llq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7llq RCSB], [https://www.ebi.ac.uk/pdbsum/7llq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7llq ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.85Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=28T:1-{4-OXO-4-[(2S)-PYRROLIDIN-2-YL]BUTANOYL}-L-PROLINE'>28T</scene>, <scene name='pdbligand=N0Y:1-benzyl-4-methoxybenzene'>N0Y</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7llq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7llq OCA], [https://pdbe.org/7llq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7llq RCSB], [https://www.ebi.ac.uk/pdbsum/7llq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7llq ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/LKHA4_HUMAN LKHA4_HUMAN] Epoxide hydrolase that catalyzes the final step in the biosynthesis of the proinflammatory mediator leukotriene B4. Has also aminopeptidase activity.<ref>PMID:1897988</ref> <ref>PMID:1975494</ref> <ref>PMID:2244921</ref> <ref>PMID:12207002</ref> <ref>PMID:11917124</ref> <ref>PMID:15078870</ref> <ref>PMID:18804029</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The aminopeptidase activity (AP) of the leukotriene A4 hydrolase (LTA4H) enzyme has emerged as a therapeutic target to modulate host immunity. Initial reports focused on the benefits of augmenting the LTA4H AP activity and clearing its putative pro-inflammatory substrate Pro-Gly-Pro (PGP). However, recent reports have introduced substantial complexity disconnecting the LTA4H modulator 4-methoxydiphenylmethane (4MDM) from PGP as follows: (1) 4MDM inhibits PGP hydrolysis and subsequently inhibition of LTA4H AP activity, and (2) 4MDM activates the same enzyme target in the presence of alternative substrates. Differential modulation of LTA4H by 4MDM was probed in a murine model of acute lung inflammation, which showed that 4MDM modulates the host neutrophilic response independent of clearing PGP. X-ray crystallography showed that 4MDM and PGP bind at the zinc binding pocket and no allosteric binding was observed. We then determined that 4MDM modulation is not dependent on the allosteric binding of the ligand, but on the N-terminal side chain of the peptide. In conclusion, our study revealed that a peptidase therapeutic target can interact with its substrate and ligand in complex biochemical mechanisms. This raises an important consideration when ligands are designed to explain some of the unpredictable outcomes observed in therapeutic discovery targeting LTA4H.
		+
		+	Substrate-dependent modulation of the leukotriene A4 hydrolase aminopeptidase activity and effect in a murine model of acute lung inflammation.,Lee KH, Ali NF, Lee SH, Zhang Z, Burdick M, Beaulac ZJ, Petruncio G, Li L, Xiang J, Chung EM, Foreman KW, Noble SM, Shim YM, Paige M Sci Rep. 2022 Jun 8;12(1):9443. doi: 10.1038/s41598-022-13238-6. PMID:35676292<ref>PMID:35676292</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7llq" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Leukotriene A4 Hydrolase\|Leukotriene A4 Hydrolase]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Lee KH]]		[[Category: Lee KH]]

OCA at 09:43, 22 June 2022

2022-06-22T09:43:43Z

←Older revision		Revision as of 09:43, 22 June 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7llq ~~is ON HOLD until Paper Publication~~	+	==Substrate-dependent divergence of leukotriene A4 hydrolase aminopeptidase activity==
-		+	<StructureSection load='7llq' size='340' side='right'caption='[[7llq]]' scene=''>
-	~~Authors~~: ~~Lee, K~~.H., ~~Lee, S~~.H., ~~Shim~~, Y.M., ~~Paige, M~~., ~~Noble, S~~.M.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LLQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LLQ FirstGlance]. <br>
-	~~Description: Substrate-dependent divergence of leukotriene A4 hydrolase aminopeptidase activity~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7llq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7llq OCA], [https://pdbe.org/7llq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7llq RCSB], [https://www.ebi.ac.uk/pdbsum/7llq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7llq ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Noble, S.M~~]]	+	__TOC__
-	[[Category: Lee~~, S.H~~]]	+	</StructureSection>
-	[[Category: ~~Paige, M~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Shim, Y.~~M]]	+	[[Category: Lee KH]]
-	[[Category: ~~Lee, K.H~~]]	+	[[Category: Lee SH]]
		+	[[Category: Noble SM]]
		+	[[Category: Paige M]]
		+	[[Category: Shim YM]]

OCA at 08:57, 18 May 2022

2022-05-18T08:57:01Z

←Older revision		Revision as of 08:57, 18 May 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7llq is ON HOLD	+	The entry 7llq is ON HOLD until Paper Publication

	Authors: Lee, K.H., Lee, S.H., Shim, Y.M., Paige, M., Noble, S.M.		Authors: Lee, K.H., Lee, S.H., Shim, Y.M., Paige, M., Noble, S.M.
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	Description: Substrate-dependent divergence of leukotriene A4 hydrolase aminopeptidase activity		Description: Substrate-dependent divergence of leukotriene A4 hydrolase aminopeptidase activity
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Noble, S.M]]
	[[Category: Lee, S.H]]		[[Category: Lee, S.H]]
	[[Category: Paige, M]]		[[Category: Paige, M]]
	[[Category: Shim, Y.M]]		[[Category: Shim, Y.M]]
-	[[Category: Noble, S.M]]
	[[Category: Lee, K.H]]		[[Category: Lee, K.H]]

OCA: Protected "7llq" [edit=sysop:move=sysop]

2021-02-10T09:21:59Z

Protected "7llq" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:21, 10 February 2021

OCA: New page: '''Unreleased structure''' The entry 7llq is ON HOLD Authors: Lee, K.H., Lee, S.H., Shim, Y.M., Paige, M., Noble, S.M. Description: Substrate-dependent divergence of leukotriene A4 hyd...

2021-02-10T09:21:58Z

New page: '''Unreleased structure''' The entry 7llq is ON HOLD Authors: Lee, K.H., Lee, S.H., Shim, Y.M., Paige, M., Noble, S.M. Description: Substrate-dependent divergence of leukotriene A4 hyd...

New page

'''Unreleased structure'''

The entry 7llq is ON HOLD

Authors: Lee, K.H., Lee, S.H., Shim, Y.M., Paige, M., Noble, S.M.

Description: Substrate-dependent divergence of leukotriene A4 hydrolase aminopeptidase activity
[[Category: Unreleased Structures]]
[[Category: Lee, S.H]]
[[Category: Paige, M]]
[[Category: Shim, Y.M]]
[[Category: Noble, S.M]]
[[Category: Lee, K.H]]