7osa - Revision history

OCA at 12:55, 1 February 2024

2024-02-01T12:55:29Z

←Older revision		Revision as of 12:55, 1 February 2024
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-	====	+	==Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands==
-	<StructureSection load='7osa' size='340' side='right'caption='[[7osa]]' scene=''>	+	<StructureSection load='7osa' size='340' side='right'caption='[[7osa]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7osa]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OSA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OSA FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7osa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7osa OCA], [https://pdbe.org/7osa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7osa RCSB], [https://www.ebi.ac.uk/pdbsum/7osa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7osa ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7osa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7osa OCA], [https://pdbe.org/7osa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7osa RCSB], [https://www.ebi.ac.uk/pdbsum/7osa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7osa ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A6A5Q627_YEASX A0A6A5Q627_YEASX]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Translation of the genetic code into proteins is realized through repetitions of synchronous translocation of messenger RNA (mRNA) and transfer RNAs (tRNA) through the ribosome. In eukaryotes translocation is ensured by elongation factor 2 (eEF2), which catalyses the process and actively contributes to its accuracy(1). Although numerous studies point to critical roles for both the conserved eukaryotic posttranslational modification diphthamide in eEF2 and tRNA modifications in supporting the accuracy of translocation, detailed molecular mechanisms describing their specific functions are poorly understood. Here we report a high-resolution X-ray structure of the eukaryotic 80S ribosome in a translocation-intermediate state containing mRNA, naturally modified eEF2 and tRNAs. The crystal structure reveals a network of stabilization of codon-anticodon interactions involving diphthamide(1) and the hypermodified nucleoside wybutosine at position 37 of phenylalanine tRNA, which is also known to enhance translation accuracy(2). The model demonstrates how the decoding centre releases a codon-anticodon duplex, allowing its movement on the ribosome, and emphasizes the function of eEF2 as a 'pawl' defining the directionality of translocation(3). This model suggests how eukaryote-specific elements of the 80S ribosome, eEF2 and tRNAs undergo large-scale molecular reorganizations to ensure maintenance of the mRNA reading frame during the complex process of translocation.
		+
		+	Accuracy mechanism of eukaryotic ribosome translocation.,Djumagulov M, Demeshkina N, Jenner L, Rozov A, Yusupov M, Yusupova G Nature. 2021 Dec;600(7889):543-546. doi: 10.1038/s41586-021-04131-9. Epub 2021 , Dec 1. PMID:34853469<ref>PMID:34853469</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7osa" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Elongation factor 3D structures\|Elongation factor 3D structures]]
		+	*[[Ribosome 3D structures\|Ribosome 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Saccharomyces cerevisiae]]
		+	[[Category: Demeshkina N]]
		+	[[Category: Djumagulov M]]
		+	[[Category: Jenner L]]
		+	[[Category: Rozov A]]
		+	[[Category: Yusupov M]]
		+	[[Category: Yusupova G]]

OCA at 09:56, 8 December 2021

2021-12-08T09:56:33Z

←Older revision		Revision as of 09:56, 8 December 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7osa ~~is ON HOLD~~	+	====
-		+	<StructureSection load='7osa' size='340' side='right'caption='[[7osa]]' scene=''>
-	~~Authors~~: ~~Djumagulov, M~~.~~, Jenner, L~~.~~, Rozov, A~~.~~, Demeshkina, N~~.~~, Yusupov, M~~.~~, Yusupova, G~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~: ~~Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7osa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7osa OCA], [https://pdbe.org/7osa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7osa RCSB], [https://www.ebi.ac.uk/pdbsum/7osa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7osa ProSAT]</span></td></tr>
-	[~~[Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[~~[Category~~: ~~Rozov, A]~~]	+	__TOC__
-	[~~[Category~~: ~~Jenner, L]~~]	+	</StructureSection>
-	[~~[Category~~: ~~Yusupova, G~~]]	+	[[Category: Large Structures]]
-	[~~[Category~~: ~~Yusupov~~, M]]	+	[[Category: Z-disk]]
-	[[Category: ~~Demeshkina, N~~]]	+
-	[[Category: ~~Djumagulov, M~~]]	+

OCA: Protected "7osa" [edit=sysop:move=sysop]

2021-06-17T13:51:27Z

Protected "7osa" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:51, 17 June 2021

OCA: New page: '''Unreleased structure''' The entry 7osa is ON HOLD Authors: Djumagulov, M., Jenner, L., Rozov, A., Demeshkina, N., Yusupov, M., Yusupova, G. Description: Pre-translocation complex of...

2021-06-17T13:51:26Z

New page: '''Unreleased structure''' The entry 7osa is ON HOLD Authors: Djumagulov, M., Jenner, L., Rozov, A., Demeshkina, N., Yusupov, M., Yusupova, G. Description: Pre-translocation complex of...

New page

'''Unreleased structure'''

The entry 7osa is ON HOLD

Authors: Djumagulov, M., Jenner, L., Rozov, A., Demeshkina, N., Yusupov, M., Yusupova, G.

Description: Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
[[Category: Unreleased Structures]]
[[Category: Rozov, A]]
[[Category: Jenner, L]]
[[Category: Yusupova, G]]
[[Category: Yusupov, M]]
[[Category: Demeshkina, N]]
[[Category: Djumagulov, M]]