7rlm - Revision history

OCA at 16:32, 18 October 2023

2023-10-18T16:32:56Z

←Older revision		Revision as of 16:32, 18 October 2023
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	==Crystal Structure of Potato Leafroll Virus (PLRV) Coat Protein==		==Crystal Structure of Potato Leafroll Virus (PLRV) Coat Protein==
-	<StructureSection load='7rlm' size='340' side='right'caption='[[7rlm]]' scene=''>	+	<StructureSection load='7rlm' size='340' side='right'caption='[[7rlm]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RLM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RLM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7rlm]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Potato_leafroll_virus Potato leafroll virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RLM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RLM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rlm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rlm OCA], [https://pdbe.org/7rlm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rlm RCSB], [https://www.ebi.ac.uk/pdbsum/7rlm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rlm ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rlm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rlm OCA], [https://pdbe.org/7rlm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rlm RCSB], [https://www.ebi.ac.uk/pdbsum/7rlm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rlm ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CAPSD_PLRV1 CAPSD_PLRV1] Major capsid protein that self-assembles to form an icosahedral capsid with a T=3 symmetry, about 23 nm in diameter, and consisting of 180 capsid proteins monomers (PubMed:31611039, PubMed:34813955). Most of the 180 monomers are the major capsid protein, but a small percentage contain the minor capsid protein, which has a long C-terminal extension (PubMed:31611039).<ref>PMID:31611039</ref> <ref>PMID:34813955</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Luteoviruses, poleroviruses, and enamoviruses are insect-transmitted, agricultural pathogens that infect a wide array of plants, including staple food crops. Previous cryo-electron microscopy studies of virus-like particles show that luteovirid viral capsids are built from a structural coat protein that organizes with T = 3 icosahedral symmetry. Here, we present the crystal structure of a truncated version of the coat protein monomer from potato leafroll virus at 1.80-A resolution. In the crystal lattice, monomers pack into flat sheets that preserve the two-fold and three-fold axes of icosahedral symmetry and show minimal structural deviations when compared to the full-length subunits of the assembled virus-like particle. These observations have important implications in viral assembly and maturation and suggest that the CP N-terminus and its interactions with RNA play an important role in generating capsid curvature.
		+
		+	Crystal structure of the potato leafroll virus coat protein and implications for viral assembly.,Adams MC, Schiltz CJ, Heck ML, Chappie JS J Struct Biol. 2021 Nov 20;214(1):107811. doi: 10.1016/j.jsb.2021.107811. PMID:34813955<ref>PMID:34813955</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7rlm" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Potato leafroll virus]]
	[[Category: Adams MC]]		[[Category: Adams MC]]
	[[Category: Chappie JS]]		[[Category: Chappie JS]]
	[[Category: Schiltz CJ]]		[[Category: Schiltz CJ]]

OCA at 07:30, 19 January 2022

2022-01-19T07:30:57Z

←Older revision		Revision as of 07:30, 19 January 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7rlm ~~is ON HOLD~~	+	==Crystal Structure of Potato Leafroll Virus (PLRV) Coat Protein==
-		+	<StructureSection load='7rlm' size='340' side='right'caption='[[7rlm]]' scene=''>
-	~~Authors~~: ~~Adams~~, M.C., ~~Chappie~~, J.S., ~~Schiltz~~, C.J.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RLM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RLM FirstGlance]. <br>
-	~~Description: Crystal Structure of Potato Leafroll Virus (PLRV) Coat Protein~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rlm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rlm OCA], [https://pdbe.org/7rlm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rlm RCSB], [https://www.ebi.ac.uk/pdbsum/7rlm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rlm ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Adams~~, M.C~~]]	+	__TOC__
-	[[Category: ~~Schiltz, C.J~~]]	+	</StructureSection>
-	[[Category: ~~Chappie, J.S~~]]	+	[[Category: Large Structures]]
		+	[[Category: Adams MC]]
		+	[[Category: Chappie JS]]
		+	[[Category: Schiltz CJ]]

OCA at 08:33, 12 January 2022

2022-01-12T08:33:13Z

←Older revision		Revision as of 08:33, 12 January 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7rlm is ON HOLD ~~until Paper Publication~~	+	The entry 7rlm is ON HOLD

	Authors: Adams, M.C., Chappie, J.S., Schiltz, C.J.		Authors: Adams, M.C., Chappie, J.S., Schiltz, C.J.

OCA at 05:10, 11 August 2021

2021-08-11T05:10:05Z

←Older revision		Revision as of 05:10, 11 August 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7rlm is ON HOLD	+	The entry 7rlm is ON HOLD until Paper Publication

	Authors: Adams, M.C., Chappie, J.S., Schiltz, C.J.		Authors: Adams, M.C., Chappie, J.S., Schiltz, C.J.

OCA: Protected "7rlm" [edit=sysop:move=sysop]

2021-08-04T09:21:07Z

Protected "7rlm" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:21, 4 August 2021

OCA: New page: '''Unreleased structure''' The entry 7rlm is ON HOLD Authors: Adams, M.C., Chappie, J.S., Schiltz, C.J. Description: Crystal Structure of Potato Leafroll Virus (PLRV) Coat Protein [[Ca...

2021-08-04T09:21:06Z

New page: '''Unreleased structure''' The entry 7rlm is ON HOLD Authors: Adams, M.C., Chappie, J.S., Schiltz, C.J. Description: Crystal Structure of Potato Leafroll Virus (PLRV) Coat Protein [[Ca...

New page

'''Unreleased structure'''

The entry 7rlm is ON HOLD

Authors: Adams, M.C., Chappie, J.S., Schiltz, C.J.

Description: Crystal Structure of Potato Leafroll Virus (PLRV) Coat Protein
[[Category: Unreleased Structures]]
[[Category: Adams, M.C]]
[[Category: Schiltz, C.J]]
[[Category: Chappie, J.S]]