7td5 - Revision history

OCA at 17:03, 18 October 2023

2023-10-18T17:03:33Z

←Older revision		Revision as of 17:03, 18 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7td5]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TD5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TD5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7td5]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TD5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TD5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.994Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7td5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7td5 OCA], [https://pdbe.org/7td5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7td5 RCSB], [https://www.ebi.ac.uk/pdbsum/7td5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7td5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7td5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7td5 OCA], [https://pdbe.org/7td5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7td5 RCSB], [https://www.ebi.ac.uk/pdbsum/7td5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7td5 ProSAT]</span></td></tr>
	</table>		</table>
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	</div>		</div>
	<div class="pdbe-citations 7td5" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 7td5" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Polycomb complex proteins 3D structures\|Polycomb complex proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 20:05, 16 November 2022

2022-11-16T20:05:04Z

←Older revision		Revision as of 20:05, 16 November 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7td5 is ~~ON HOLD~~	+	==Structure of human PRC2-EZH1 containing phosphorylated SUZ12==
		+	<StructureSection load='7td5' size='340' side='right'caption='[[7td5]], [[Resolution\|resolution]] 2.99Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7td5]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TD5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TD5 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7td5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7td5 OCA], [https://pdbe.org/7td5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7td5 RCSB], [https://www.ebi.ac.uk/pdbsum/7td5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7td5 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/EZH1_HUMAN EZH1_HUMAN] Polycomb group (PcG) protein. Catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. Able to mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. Required for embryonic stem cell derivation and self-renewal, suggesting that it is involved in safeguarding embryonic stem cell identity. Compared to EZH2-containing complexes, it is less abundant in embryonic stem cells, has weak methyltransferase activity and plays a less critical role in forming H3K27me3, which is required for embryonic stem cell identity and proper differentiation.<ref>PMID:19026781</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Polycomb repressive complex 2 (PRC2) plays a key role in maintaining cell identity during differentiation. Methyltransferase activity of PRC2 on histone H3 lysine 27 is regulated by diverse cellular mechanisms, including posttranslational modification. Here, we report a unique phosphorylation-dependent mechanism stimulating PRC2 enzymatic activity. Residue S583 of SUZ12 is phosphorylated by casein kinase 2 (CK2) in cells. A crystal structure captures phosphorylation in action: the flexible phosphorylation-dependent stimulation loop harboring S583 becomes engaged with the catalytic SET domain through a phosphoserine-centered interaction network, stabilizing the enzyme active site and in particular S-adenosyl-methionine (SAM)-binding pocket. CK2-mediated S583 phosphorylation promotes catalysis by enhancing PRC2 binding to SAM and nucleosomal substrates and facilitates reporter gene repression. Loss of S583 phosphorylation impedes PRC2 recruitment and H3K27me3 deposition in pluripotent mESCs and compromises the ability of PRC2 to maintain differentiated cell identity.

-	~~Authors: Gong~~, L., ~~Jiao~~, L., ~~Liu~~, X.	+	CK2-mediated phosphorylation of SUZ12 promotes PRC2 function by stabilizing enzyme active site.,Gong L, Liu X, Jiao L, Yang X, Lemoff A, Liu X Nat Commun. 2022 Nov 9;13(1):6781. doi: 10.1038/s41467-022-34431-1. PMID:36351927<ref>PMID:36351927</ref>

-	~~Description~~: ~~Polycomb repressive complex 2 containing wild type EZH1~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Jiao,~~ L]]	+	<div class="pdbe-citations 7td5" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Liu, X~~]]	+	== References ==
-	[[Category: ~~Gong, L~~]]	+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Gong L]]
		+	[[Category: Jiao L]]
		+	[[Category: Liu X]]

OCA at 04:38, 9 November 2022

2022-11-09T04:38:40Z

←Older revision		Revision as of 04:38, 9 November 2022
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	Authors: Gong, L., Jiao, L., Liu, X.		Authors: Gong, L., Jiao, L., Liu, X.

-	Description: ~~Chromatin~~ complex ~~-WT~~	+	Description: Polycomb repressive complex 2 containing wild type EZH1
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Jiao, L]]		[[Category: Jiao, L]]
	[[Category: Liu, X]]		[[Category: Liu, X]]
	[[Category: Gong, L]]		[[Category: Gong, L]]

OCA: Protected "7td5" [edit=sysop:move=sysop]

2022-01-05T09:22:09Z

Protected "7td5" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:22, 5 January 2022

OCA: New page: '''Unreleased structure''' The entry 7td5 is ON HOLD Authors: Gong, L., Jiao, L., Liu, X. Description: Chromatin complex -WT Category: Unreleased Structures Category: Jiao, L [...

2022-01-05T09:22:08Z

New page: '''Unreleased structure''' The entry 7td5 is ON HOLD Authors: Gong, L., Jiao, L., Liu, X. Description: Chromatin complex -WT Category: Unreleased Structures Category: Jiao, L [...

New page

'''Unreleased structure'''

The entry 7td5 is ON HOLD

Authors: Gong, L., Jiao, L., Liu, X.

Description: Chromatin complex -WT
[[Category: Unreleased Structures]]
[[Category: Jiao, L]]
[[Category: Liu, X]]
[[Category: Gong, L]]