7ttx - Revision history

OCA at 17:07, 18 October 2023

2023-10-18T17:07:50Z

←Older revision		Revision as of 17:07, 18 October 2023
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-	====	+	==Crystal structure of potent neutralizing antibody 10-40 in complex with Sarbecovirus bat RaTG13 receptor-binding domain==
-	<StructureSection load='7ttx' size='340' side='right'caption='[[7ttx]]' scene=''>	+	<StructureSection load='7ttx' size='340' side='right'caption='[[7ttx]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7ttx]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bat_coronavirus_RaTG13 Bat coronavirus RaTG13] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TTX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TTX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ttx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ttx OCA], [https://pdbe.org/7ttx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ttx RCSB], [https://www.ebi.ac.uk/pdbsum/7ttx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ttx ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ttx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ttx OCA], [https://pdbe.org/7ttx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ttx RCSB], [https://www.ebi.ac.uk/pdbsum/7ttx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ttx ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A6B9WHD3_SARS A0A6B9WHD3_SARS]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The devastation caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has made clear the importance of pandemic preparedness. To address future zoonotic outbreaks due to related viruses in the sarbecovirus subgenus, we identified a human monoclonal antibody, 10-40, that neutralized or bound all sarbecoviruses tested in vitro and protected against SARS-CoV-2 and SARS-CoV in vivo. Comparative studies with other receptor-binding domain (RBD)-directed antibodies showed 10-40 to have the greatest breadth against sarbecoviruses, suggesting that 10-40 is a promising agent for pandemic preparedness. Moreover, structural analyses on 10-40 and similar antibodies not only defined an epitope cluster in the inner face of the RBD that is well conserved among sarbecoviruses but also uncovered a distinct antibody class with a common CDRH3 motif. Our analyses also suggested that elicitation of this class of antibodies may not be overly difficult, an observation that bodes well for the development of a pan-sarbecovirus vaccine.
		+
		+	An antibody class with a common CDRH3 motif broadly neutralizes sarbecoviruses.,Liu L, Iketani S, Guo Y, Reddem ER, Casner RG, Nair MS, Yu J, Chan JF, Wang M, Cerutti G, Li Z, Morano NC, Castagna CD, Corredor L, Chu H, Yuan S, Poon VK, Chan CC, Chen Z, Luo Y, Cunningham M, Chavez A, Yin MT, Perlin DS, Tsuji M, Yuen KY, Kwong PD, Sheng Z, Huang Y, Shapiro L, Ho DD Sci Transl Med. 2022 May 25;14(646):eabn6859. doi: 10.1126/scitranslmed.abn6859. , Epub 2022 May 25. PMID:35438546<ref>PMID:35438546</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7ttx" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Antibody 3D structures\|Antibody 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bat coronavirus RaTG13]]
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Reddem ER]]
		+	[[Category: Shapiro L]]

OCA at 11:39, 27 April 2022

2022-04-27T11:39:40Z

←Older revision		Revision as of 11:39, 27 April 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7ttx ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7ttx' size='340' side='right'caption='[[7ttx]]' scene=''>
-	~~Authors~~: ~~Reddem, E~~.R.~~, Shapiro, L~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of potent neutralizing antibody 10~~-~~40 in complex with Sarbecovirus bat RaGT13 receptor-binding domain~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ttx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ttx OCA], [https://pdbe.org/7ttx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ttx RCSB], [https://www.ebi.ac.uk/pdbsum/7ttx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ttx ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: ~~Shapiro, L~~]]	+	__TOC__
-	[[Category: ~~Reddem, E.R~~]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 09:45, 23 March 2022

2022-03-23T09:45:53Z

←Older revision		Revision as of 09:45, 23 March 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7ttx is ON HOLD	+	The entry 7ttx is ON HOLD until Paper Publication

	Authors: Reddem, E.R., Shapiro, L.		Authors: Reddem, E.R., Shapiro, L.

OCA: Protected "7ttx" [edit=sysop:move=sysop]

2022-02-09T06:21:48Z

Protected "7ttx" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:21, 9 February 2022

OCA: New page: '''Unreleased structure''' The entry 7ttx is ON HOLD Authors: Reddem, E.R., Shapiro, L. Description: Crystal structure of potent neutralizing antibody 10-40 in complex with Sarbecoviru...

2022-02-09T06:21:47Z

New page: '''Unreleased structure''' The entry 7ttx is ON HOLD Authors: Reddem, E.R., Shapiro, L. Description: Crystal structure of potent neutralizing antibody 10-40 in complex with Sarbecoviru...

New page

'''Unreleased structure'''

The entry 7ttx is ON HOLD

Authors: Reddem, E.R., Shapiro, L.

Description: Crystal structure of potent neutralizing antibody 10-40 in complex with Sarbecovirus bat RaGT13 receptor-binding domain
[[Category: Unreleased Structures]]
[[Category: Shapiro, L]]
[[Category: Reddem, E.R]]