OCA at 17:11, 18 October 2023

2023-10-18T17:11:23Z

←Older revision		Revision as of 17:11, 18 October 2023
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	==apo-CTX-M-15==		==apo-CTX-M-15==
-	<StructureSection load='7u57' size='340' side='right'caption='[[7u57]]' scene=''>	+	<StructureSection load='7u57' size='340' side='right'caption='[[7u57]], [[Resolution\|resolution]] 2.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7U57 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7U57 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7u57]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7U57 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7U57 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7u57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7u57 OCA], [https://pdbe.org/7u57 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7u57 RCSB], [https://www.ebi.ac.uk/pdbsum/7u57 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7u57 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.37Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7u57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7u57 OCA], [https://pdbe.org/7u57 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7u57 RCSB], [https://www.ebi.ac.uk/pdbsum/7u57 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7u57 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/BLC1_ECOLX BLC1_ECOLX] Broad spectrum beta-lactamase which confers resistance to penicillins, as well as first, second and third-generation cephalosporins.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cefotaximase-Munich (CTX-M) extended-spectrum beta-lactamases (ESBLs) are commonly associated with Gram-negative, hospital-acquired infections worldwide. Several beta-lactamase inhibitors, such as clavulanate, are used to inhibit the activity of these enzymes. To understand the mechanism of CTX-M-15 activity, we have determined the crystal structures of CTX-M-15 in complex with two specific classes of beta-lactam compounds, desfuroylceftiofur (DFC) and ampicillin, and an inhibitor, clavulanic acid. The crystal structures revealed that Ser70 and five other residues (Lys73, Tyr105, Glu166, Ser130, and Ser237) participate in catalysis and binding of those compounds. Based on analysis of steady-state kinetics, thermodynamic data, and molecular docking to both wild-type and S70A mutant structures, we determined that CTX-M-15 has a similar affinity for all beta-lactam compounds (ceftiofur, nitrocefin, DFC, and ampicillin), but with lower affinity for clavulanic acid. A catalytic mechanism for tested beta-lactams and two-step inhibition mechanism of clavulanic acid were proposed. CTX-M-15 showed a higher activity toward DFC and nitrocefin, but significantly lower activity toward ampicillin and ceftiofur. The interaction between CTX-M-15 and both ampicillin and ceftiofur displayed a higher entropic but lower enthalpic effect, compared with DFC and nitrocefin. DFC, a metabolite of ceftiofur, displayed lower entropy and higher enthalpy than ceftiofur. This finding suggests that compounds containing amine moiety (e.g., ampicillin) and the furfural moiety (e.g., ceftiofur) could hinder the hydrolytic activity of CTX-M-15.
		+
		+	Characterization of Interactions between CTX-M-15 and Clavulanic Acid, Desfuroylceftiofur, Ceftiofur, Ampicillin, and Nitrocefin.,Ahmadvand P, Avillan JJ, Lewis JA, Call DR, Kang C Int J Mol Sci. 2022 May 7;23(9). pii: ijms23095229. doi: 10.3390/ijms23095229. PMID:35563620<ref>PMID:35563620</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7u57" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Beta-lactamase 3D structures\|Beta-lactamase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Ahmadvand P]]		[[Category: Ahmadvand P]]
	[[Category: Kang CH]]		[[Category: Kang CH]]

OCA at 07:59, 25 May 2022

2022-05-25T07:59:49Z

←Older revision		Revision as of 07:59, 25 May 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7u57 ~~is ON HOLD until Paper Publication~~	+	==apo-CTX-M-15==
-		+	<StructureSection load='7u57' size='340' side='right'caption='[[7u57]]' scene=''>
-	~~Authors~~: ~~Ahmadvand~~, P., ~~Kang~~, C.H.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7U57 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7U57 FirstGlance]. <br>
-	~~Description~~: ~~apo~~-~~CTX-M-15~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7u57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7u57 OCA], [https://pdbe.org/7u57 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7u57 RCSB], [https://www.ebi.ac.uk/pdbsum/7u57 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7u57 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Kang, C.H~~]]	+	__TOC__
-	[[Category: ~~Ahmadvand, P~~]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Ahmadvand P]]
		+	[[Category: Kang CH]]

OCA: Protected "7u57" [edit=sysop:move=sysop]

2022-03-09T04:58:05Z

Protected "7u57" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:58, 9 March 2022

OCA: New page: '''Unreleased structure''' The entry 7u57 is ON HOLD until Paper Publication Authors: Ahmadvand, P., Kang, C.H. Description: apo-CTX-M-15 Category: Unreleased Structures [[Category...

2022-03-09T04:58:04Z

New page: '''Unreleased structure''' The entry 7u57 is ON HOLD until Paper Publication Authors: Ahmadvand, P., Kang, C.H. Description: apo-CTX-M-15 Category: Unreleased Structures [[Category...

New page

'''Unreleased structure'''

The entry 7u57 is ON HOLD until Paper Publication

Authors: Ahmadvand, P., Kang, C.H.

Description: apo-CTX-M-15
[[Category: Unreleased Structures]]
[[Category: Kang, C.H]]
[[Category: Ahmadvand, P]]

7u57 - Revision history

OCA at 17:11, 18 October 2023

OCA at 07:59, 25 May 2022

OCA: Protected "7u57" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7u57 is ON HOLD until Paper Publication Authors: Ahmadvand, P., Kang, C.H. Description: apo-CTX-M-15 Category: Unreleased Structures [[Category...