OCA at 06:04, 26 October 2022

2022-10-26T06:04:26Z

←Older revision		Revision as of 06:04, 26 October 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7ugo is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Cryo-EM structure of BG24 inferred germline Fabs with mature CDR3s and 10-1074 Fabs in complex with HIV-1 Env immunogen BG505-SOSIPv4.1-GT1==
		+	<StructureSection load='7ugo' size='340' side='right'caption='[[7ugo]], [[Resolution\|resolution]] 4.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7ugo]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UGO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UGO FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ugo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ugo OCA], [https://pdbe.org/7ugo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ugo RCSB], [https://www.ebi.ac.uk/pdbsum/7ugo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ugo ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q2N0S5_9HIV1 Q2N0S5_9HIV1] The envelope glyprotein gp160 precursor down-modulates cell surface CD4 antigen by interacting with it in the endoplasmic reticulum and blocking its transport to the cell surface.[RuleBase:RU004292][SAAS:SAAS00139820] The gp120-gp41 heterodimer allows rapid transcytosis of the virus through CD4 negative cells such as simple epithelial monolayers of the intestinal, rectal and endocervical epithelial barriers. Both gp120 and gp41 specifically recognize glycosphingolipids galactosyl-ceramide (GalCer) or 3' sulfo-galactosyl-ceramide (GalS) present in the lipid rafts structures of epithelial cells. Binding to these alternative receptors allows the rapid transcytosis of the virus through the epithelial cells. This transcytotic vesicle-mediated transport of virions from the apical side to the basolateral side of the epithelial cells does not involve infection of the cells themselves.[SAAS:SAAS00140087]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	BG24, a VRC01-class broadly neutralizing antibody (bNAb) against HIV-1 Env with relatively few somatic hypermutations (SHMs), represents a promising target for vaccine strategies to elicit CD4-binding site (CD4bs) bNAbs. To understand how SHMs correlate with BG24 neutralization of HIV-1, we report 4.1 A and 3.4 A single-particle cryo-EM structures of two inferred germline (iGL) BG24 precursors complexed with engineered Env-based immunogens lacking CD4bs N-glycans. Structures reveal critical Env contacts by BG24iGL and identify antibody light chain structural features that impede Env recognition. In addition, biochemical data and cryo-EM structures of BG24iGL variants bound to Envs with CD4bs glycans present provide insights into N-glycan accommodation, including structural modes of light chain adaptations in the presence of the N276gp120 glycan. Together, these findings reveal Env regions critical for germline antibody recognition and potential sites to alter in immunogen design.

-	~~Authors:~~ Dam, ~~K.A.~~, ~~Bjorkman~~, P.J.	+	HIV-1 CD4-binding site germline antibody-Env structures inform vaccine design.,Dam KA, Barnes CO, Gristick HB, Schoofs T, Gnanapragasam PNP, Nussenzweig MC, Bjorkman PJ Nat Commun. 2022 Oct 17;13(1):6123. doi: 10.1038/s41467-022-33860-2. PMID:36253376<ref>PMID:36253376</ref>

-	~~Description: Cryo-EM structure~~ of ~~BG24 inferred germline Fabs with mature CDR3s and 10~~-~~1074 Fabs in complex with HIV~~-1 ~~Env immunogen BG505-SOSIPv4.1-GT1~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Dam, K.A~~]]	+	<div class="pdbe-citations 7ugo" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Bjorkman, P.J~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Human immunodeficiency virus 1]]
		+	[[Category: Large Structures]]
		+	[[Category: Bjorkman PJ]]
		+	[[Category: Dam KA]]

OCA at 16:28, 19 October 2022

2022-10-19T16:28:56Z

←Older revision		Revision as of 16:28, 19 October 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7ugo is ON HOLD	+	The entry 7ugo is ON HOLD until Paper Publication

	Authors: Dam, K.A., Bjorkman, P.J.		Authors: Dam, K.A., Bjorkman, P.J.

OCA: Protected "7ugo" [edit=sysop:move=sysop]

2022-03-30T09:37:31Z

Protected "7ugo" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:37, 30 March 2022

OCA: New page: '''Unreleased structure''' The entry 7ugo is ON HOLD Authors: Dam, K.A., Bjorkman, P.J. Description: Cryo-EM structure of BG24 inferred germline Fabs with mature CDR3s and 10-1074 Fabs...

2022-03-30T09:37:30Z

New page: '''Unreleased structure''' The entry 7ugo is ON HOLD Authors: Dam, K.A., Bjorkman, P.J. Description: Cryo-EM structure of BG24 inferred germline Fabs with mature CDR3s and 10-1074 Fabs...

New page

'''Unreleased structure'''

The entry 7ugo is ON HOLD

Authors: Dam, K.A., Bjorkman, P.J.

Description: Cryo-EM structure of BG24 inferred germline Fabs with mature CDR3s and 10-1074 Fabs in complex with HIV-1 Env immunogen BG505-SOSIPv4.1-GT1
[[Category: Unreleased Structures]]
[[Category: Dam, K.A]]
[[Category: Bjorkman, P.J]]

7ugo - Revision history

OCA at 06:04, 26 October 2022

OCA at 16:28, 19 October 2022

OCA: Protected "7ugo" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7ugo is ON HOLD Authors: Dam, K.A., Bjorkman, P.J. Description: Cryo-EM structure of BG24 inferred germline Fabs with mature CDR3s and 10-1074 Fabs...