7up1 - Revision history

OCA at 09:55, 25 October 2023

2023-10-25T09:55:40Z

←Older revision		Revision as of 09:55, 25 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7up1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UP1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UP1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7up1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UP1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UP1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NZR:(2M)-4-methyl-2-(2H-tetrazol-5-yl)[1,1-biphenyl]-3-sulfonamide'>NZR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.11Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NZR:(2M)-4-methyl-2-(2H-tetrazol-5-yl)[1,1-biphenyl]-3-sulfonamide'>NZR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7up1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7up1 OCA], [https://pdbe.org/7up1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7up1 RCSB], [https://www.ebi.ac.uk/pdbsum/7up1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7up1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7up1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7up1 OCA], [https://pdbe.org/7up1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7up1 RCSB], [https://www.ebi.ac.uk/pdbsum/7up1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7up1 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 07:27, 8 March 2023

2023-03-08T07:27:06Z

←Older revision		Revision as of 07:27, 8 March 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7up1 is ~~ON HOLD until Paper~~ Publication	+	==NDM1-inhibitor co-structure==
		+	<StructureSection load='7up1' size='340' side='right'caption='[[7up1]], [[Resolution\|resolution]] 1.11Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7up1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UP1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UP1 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NZR:(2M)-4-methyl-2-(2H-tetrazol-5-yl)[1,1-biphenyl]-3-sulfonamide'>NZR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7up1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7up1 OCA], [https://pdbe.org/7up1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7up1 RCSB], [https://www.ebi.ac.uk/pdbsum/7up1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7up1 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/E9NWK5_KLEPN E9NWK5_KLEPN]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	With the emergence and rapid spreading of NDM-1 and existence of clinically relevant VIM-1 and IMP-1, discovery of pan inhibitors targeting metallo-beta-lactamases (MBLs) became critical in our battle against bacterial infection. Concurrent with our fragment and high-throughput screenings, we performed a knowledge-based search of known metallo-beta-lactamase inhibitors (MBLIs) to identify starting points for early engagement of medicinal chemistry. A class of compounds exemplified by 11, discovered earlier as B. fragilis metallo-beta-lactamase inhibitors, was selected for in silico virtual screening. From these efforts, compound 12 was identified with activity against NDM-1 only. Initial exploration on metal binding design followed by structure-guided optimization led to the discovery of a series of compounds represented by 23 with a pan MBL inhibition profile. In in vivo studies, compound 23 in combination with imipenem (IPM) robustly lowered the bacterial burden in a murine infection model and became the lead for the invention of MBLI clinical candidates.

-	~~Authors~~:	+	Rapid Evolution of a Fragment-like Molecule to Pan-Metallo-Beta-Lactamase Inhibitors: Initial Leads toward Clinical Candidates.,Mandal M, Xiao L, Pan W, Scapin G, Li G, Tang H, Yang SW, Pan J, Root Y, de Jesus RK, Yang C, Prosise W, Dayananth P, Mirza A, Therien AG, Young K, Flattery A, Garlisi C, Zhang R, Chu D, Sheth P, Chu I, Wu J, Markgraf C, Kim HY, Painter R, Mayhood TW, DiNunzio E, Wyss DF, Buevich AV, Fischmann T, Pasternak A, Dong S, Hicks JD, Villafania A, Liang L, Murgolo N, Black T, Hagmann WK, Tata J, Parmee ER, Weber AE, Su J, Tang H J Med Chem. 2022 Dec 22;65(24):16234-16251. doi: 10.1021/acs.jmedchem.2c00766. , Epub 2022 Dec 7. PMID:36475645<ref>PMID:36475645</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 7up1" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Klebsiella pneumoniae]]
		+	[[Category: Large Structures]]
		+	[[Category: Fischmann TO]]
		+	[[Category: Scapin G]]

OCA at 09:01, 18 May 2022

2022-05-18T09:01:11Z

←Older revision		Revision as of 09:01, 18 May 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7up1 is ON HOLD	+	The entry 7up1 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7up1" [edit=sysop:move=sysop]

2022-04-21T01:38:12Z

Protected "7up1" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:38, 21 April 2022

OCA: New page: '''Unreleased structure''' The entry 7up1 is ON HOLD Authors: Description: Category: Unreleased Structures

2022-04-21T01:38:11Z

New page: '''Unreleased structure''' The entry 7up1 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7up1 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]