7uu3 - Revision history

OCA at 10:12, 16 August 2023

2023-08-16T10:12:03Z

←Older revision		Revision as of 10:12, 16 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7uu3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Macaca_mulatta Macaca mulatta] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UU3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UU3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7uu3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Macaca_mulatta Macaca mulatta] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UU3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UU3 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.099Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7uu3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7uu3 OCA], [https://pdbe.org/7uu3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7uu3 RCSB], [https://www.ebi.ac.uk/pdbsum/7uu3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7uu3 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7uu3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7uu3 OCA], [https://pdbe.org/7uu3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7uu3 RCSB], [https://www.ebi.ac.uk/pdbsum/7uu3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7uu3 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 07:34, 11 January 2023

2023-01-11T07:34:50Z

←Older revision		Revision as of 07:34, 11 January 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 7uu3 is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of APOBEC3G complex with 3'overhangs RNA-Complex==
		+	<StructureSection load='7uu3' size='340' side='right'caption='[[7uu3]], [[Resolution\|resolution]] 3.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7uu3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Macaca_mulatta Macaca mulatta] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UU3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UU3 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7uu3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7uu3 OCA], [https://pdbe.org/7uu3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7uu3 RCSB], [https://www.ebi.ac.uk/pdbsum/7uu3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7uu3 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/M1GSK9_MACMU M1GSK9_MACMU]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	An essential step in restricting HIV infectivity by the antiviral factor APOBEC3G is its incorporation into progeny virions via binding to HIV RNA. However, the mechanism of APOBEC3G capturing viral RNA is unknown. Here, we report crystal structures of a primate APOBEC3G bound to different types of RNAs, revealing that APOBEC3G specifically recognizes unpaired 5'-AA-3' dinucleotides, and to a lesser extent, 5'-GA-3' dinucleotides. APOBEC3G binds to the common 3'A in the AA/GA motifs using an aromatic/hydrophobic pocket in the non-catalytic domain. It binds to the 5'A or 5'G in the AA/GA motifs using an aromatic/hydrophobic groove conformed between the non-catalytic and catalytic domains. APOBEC3G RNA binding property is distinct from that of the HIV nucleocapsid protein recognizing unpaired guanosines. Our findings suggest that the sequence-specific RNA recognition is critical for APOBEC3G virion packaging and restricting HIV infectivity.

-	~~Authors~~:	+	Structural basis of sequence-specific RNA recognition by the antiviral factor APOBEC3G.,Yang H, Kim K, Li S, Pacheco J, Chen XS Nat Commun. 2022 Dec 5;13(1):7498. doi: 10.1038/s41467-022-35201-9. PMID:36470880<ref>PMID:36470880</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 7uu3" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Macaca mulatta]]
		+	[[Category: Synthetic construct]]
		+	[[Category: Chen X-J]]
		+	[[Category: Li S-X]]
		+	[[Category: Yang HJ]]

OCA at 07:40, 24 November 2022

2022-11-24T07:40:34Z

←Older revision		Revision as of 07:40, 24 November 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7uu3 is ON HOLD	+	The entry 7uu3 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 06:21, 21 September 2022

2022-09-21T06:21:56Z

←Older revision		Revision as of 06:21, 21 September 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7uu3 is ON HOLD ~~until Paper Publication~~	+	The entry 7uu3 is ON HOLD

	Authors:		Authors:

OCA at 03:52, 8 June 2022

2022-06-08T03:52:10Z

←Older revision		Revision as of 03:52, 8 June 2022
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7uu3 is ON HOLD	+	The entry 7uu3 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7uu3" [edit=sysop:move=sysop]

2022-05-04T11:35:44Z

Protected "7uu3" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:35, 4 May 2022

OCA: New page: '''Unreleased structure''' The entry 7uu3 is ON HOLD Authors: Description: Category: Unreleased Structures

2022-05-04T11:35:43Z

New page: '''Unreleased structure''' The entry 7uu3 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7uu3 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]