7vbx - Revision history

OCA at 17:22, 29 November 2023

2023-11-29T17:22:50Z

←Older revision		Revision as of 17:22, 29 November 2023
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	==Crystal structure of human pyruvate dehydrogenase kinase 2 in complex with compound 20==		==Crystal structure of human pyruvate dehydrogenase kinase 2 in complex with compound 20==
-	<StructureSection load='7vbx' size='340' side='right'caption='[[7vbx]]' scene=''>	+	<StructureSection load='7vbx' size='340' side='right'caption='[[7vbx]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VBX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7vbx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VBX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vbx OCA], [https://pdbe.org/7vbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vbx RCSB], [https://www.ebi.ac.uk/pdbsum/7vbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vbx ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5ZP:(3~{S})-3-[5-(8-cyclopropyl-2-methyl-9~{H}-pyrido[2,3-b]indol-3-yl)-1,3,4-oxadiazol-2-yl]-4-methyl-~{N}-[(1~{R})-1-phenylethyl]pentanamide'>5ZP</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vbx OCA], [https://pdbe.org/7vbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vbx RCSB], [https://www.ebi.ac.uk/pdbsum/7vbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vbx ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PDK2_HUMAN PDK2_HUMAN] Serine/threonine kinase that plays a key role in the regulation of glucose and fatty acid metabolism and homeostasis via phosphorylation of the pyruvate dehydrogenase subunits PDHA1 and PDHA2. This inhibits pyruvate dehydrogenase activity, and thereby regulates metabolite flux through the tricarboxylic acid cycle, down-regulates aerobic respiration and inhibits the formation of acetyl-coenzyme A from pyruvate. Inhibition of pyruvate dehydrogenase decreases glucose utilization and increases fat metabolism. Mediates cellular responses to insulin. Plays an important role in maintaining normal blood glucose levels and in metabolic adaptation to nutrient availability. Via its regulation of pyruvate dehydrogenase activity, plays an important role in maintaining normal blood pH and in preventing the accumulation of ketone bodies under starvation. Plays a role in the regulation of cell proliferation and in resistance to apoptosis under oxidative stress. Plays a role in p53/TP53-mediated apoptosis.<ref>PMID:7499431</ref> <ref>PMID:9787110</ref> <ref>PMID:17222789</ref> <ref>PMID:19833728</ref> <ref>PMID:21283817</ref> <ref>PMID:22123926</ref>
		+
		+	==See Also==
		+	*[[Pyruvate dehydrogenase kinase\|Pyruvate dehydrogenase kinase]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Adachi T]]		[[Category: Adachi T]]

OCA at 10:19, 16 February 2022

2022-02-16T10:19:27Z

←Older revision		Revision as of 10:19, 16 February 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7vbx is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of human pyruvate dehydrogenase kinase 2 in complex with compound 20==
-		+	<StructureSection load='7vbx' size='340' side='right'caption='[[7vbx]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VBX FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vbx OCA], [https://pdbe.org/7vbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vbx RCSB], [https://www.ebi.ac.uk/pdbsum/7vbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vbx ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Adachi T]]
		+	[[Category: Doi S]]
		+	[[Category: Fujishima A]]
		+	[[Category: Iwanaga T]]
		+	[[Category: Orita T]]

OCA at 08:25, 15 September 2021

2021-09-15T08:25:36Z

←Older revision		Revision as of 08:25, 15 September 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7vbx is ON HOLD	+	The entry 7vbx is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7vbx" [edit=sysop:move=sysop]

2021-09-08T08:03:57Z

Protected "7vbx" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:03, 8 September 2021

OCA: New page: '''Unreleased structure''' The entry 7vbx is ON HOLD Authors: Description: Category: Unreleased Structures

2021-09-08T08:03:56Z

New page: '''Unreleased structure''' The entry 7vbx is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7vbx is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]