7vn5 - Revision history

OCA at 17:28, 29 November 2023

2023-11-29T17:28:35Z

←Older revision		Revision as of 17:28, 29 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7vn5]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana], [https://en.wikipedia.org/wiki/Serratia_sp._FS14 Serratia sp. FS14] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VN5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VN5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7vn5]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana], [https://en.wikipedia.org/wiki/Serratia_sp._FS14 Serratia sp. FS14] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VN5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VN5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.95Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vn5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vn5 OCA], [https://pdbe.org/7vn5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vn5 RCSB], [https://www.ebi.ac.uk/pdbsum/7vn5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vn5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vn5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vn5 OCA], [https://pdbe.org/7vn5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vn5 RCSB], [https://www.ebi.ac.uk/pdbsum/7vn5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vn5 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:13, 7 December 2022

2022-12-07T08:13:31Z

←Older revision		Revision as of 08:13, 7 December 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7vn5 is ~~ON HOLD until 2024~~-01-10	+	==Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TTCACGTGAA==
-		+	<StructureSection load='7vn5' size='340' side='right'caption='[[7vn5]], [[Resolution\|resolution]] 1.95Å' scene=''>
-	~~Authors~~: ~~Nosaki~~, S., ~~Tanokura~~, M., ~~Miyakawa~~, T.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[7vn5]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana], [https://en.wikipedia.org/wiki/Serratia_sp._FS14 Serratia sp. FS14] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VN5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VN5 FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure~~ of ~~MBP-fused BIL1~~/~~BZR1~~ (21-90) in ~~complex with double~~-~~stranded DNA contaning TTCACGTGAA~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vn5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vn5 OCA], [https://pdbe.org/7vn5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vn5 RCSB], [https://www.ebi.ac.uk/pdbsum/7vn5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vn5 ProSAT]</span></td></tr>
-	[[Category: ~~Tanokura, M~~]]	+	</table>
-	[[Category: Miyakawa, T]]	+	== Function ==
-	[[Category: Nosaki, S]]	+	[https://www.uniprot.org/uniprot/A0A4P1LXE0_SERSF A0A4P1LXE0_SERSF] Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Binds maltose and higher maltodextrins.[RuleBase:RU365005][https://www.uniprot.org/uniprot/BZR1_ARATH BZR1_ARATH] Transcriptional repressor that binds to the brassinosteroid (BR) response element (BRRE) 5'-CGTG(T/C)G-3' in gene promoter. Regulates positively the brassinosteroid-signaling pathway (PubMed:33324437). Mediates downstream growth responses and negative feedback regulation of brassinosteroid biosynthesis. Promotes growth. Modulates ovule initiation and development by monitoring the expression of genes related to ovule development (e.g. HLL, ANT, and AP2). Regulates negatively the abscisic acid (ABA) signaling pathway during the post-germination stage (PubMed:33324437).<ref>PMID:15681342</ref> <ref>PMID:22914576</ref> <ref>PMID:33324437</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Arabidopsis thaliana]]
		+	[[Category: Large Structures]]
		+	[[Category: Serratia sp. FS14]]
		+	[[Category: Synthetic construct]]
		+	[[Category: Miyakawa T]]
		+	[[Category: Nosaki S]]
		+	[[Category: Tanokura M]]

OCA at 16:29, 19 October 2022

2022-10-19T16:29:36Z

←Older revision		Revision as of 16:29, 19 October 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7vn5 is ON HOLD until ~~Paper Publication~~	+	The entry 7vn5 is ON HOLD until 2024-01-10

	Authors: Nosaki, S., Tanokura, M., Miyakawa, T.		Authors: Nosaki, S., Tanokura, M., Miyakawa, T.

OCA at 12:59, 3 November 2021

2021-11-03T12:59:37Z

←Older revision		Revision as of 12:59, 3 November 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7vn5 is ON HOLD	+	The entry 7vn5 is ON HOLD until Paper Publication

	Authors: Nosaki, S., Tanokura, M., Miyakawa, T.		Authors: Nosaki, S., Tanokura, M., Miyakawa, T.
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	Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TTCACGTGAA		Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TTCACGTGAA
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Nosaki, S]]
	[[Category: Tanokura, M]]		[[Category: Tanokura, M]]
	[[Category: Miyakawa, T]]		[[Category: Miyakawa, T]]
		+	[[Category: Nosaki, S]]

OCA: Protected "7vn5" [edit=sysop:move=sysop]

2021-10-20T15:15:50Z

Protected "7vn5" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:15, 20 October 2021

OCA: New page: '''Unreleased structure''' The entry 7vn5 is ON HOLD Authors: Nosaki, S., Tanokura, M., Miyakawa, T. Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with doubl...

2021-10-20T15:15:49Z

New page: '''Unreleased structure''' The entry 7vn5 is ON HOLD Authors: Nosaki, S., Tanokura, M., Miyakawa, T. Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with doubl...

New page

'''Unreleased structure'''

The entry 7vn5 is ON HOLD

Authors: Nosaki, S., Tanokura, M., Miyakawa, T.

Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning TTCACGTGAA
[[Category: Unreleased Structures]]
[[Category: Nosaki, S]]
[[Category: Tanokura, M]]
[[Category: Miyakawa, T]]