7yo8 - Revision history

OCA at 18:10, 29 November 2023

2023-11-29T18:10:47Z

←Older revision		Revision as of 18:10, 29 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7yo8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7YO8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7YO8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7yo8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7YO8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7YO8 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7yo8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7yo8 OCA], [https://pdbe.org/7yo8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7yo8 RCSB], [https://www.ebi.ac.uk/pdbsum/7yo8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7yo8 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.805Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7yo8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7yo8 OCA], [https://pdbe.org/7yo8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7yo8 RCSB], [https://www.ebi.ac.uk/pdbsum/7yo8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7yo8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 07:19, 3 November 2022

2022-11-03T07:19:19Z

←Older revision		Revision as of 07:19, 3 November 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7yo8 is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of fission yeast Hfl1 LIR fused to human GABARAPL2==
		+	<StructureSection load='7yo8' size='340' side='right'caption='[[7yo8]], [[Resolution\|resolution]] 1.81Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7yo8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7YO8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7YO8 FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7yo8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7yo8 OCA], [https://pdbe.org/7yo8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7yo8 RCSB], [https://www.ebi.ac.uk/pdbsum/7yo8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7yo8 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TM184_SCHPO TM184_SCHPO] [https://www.uniprot.org/uniprot/GBRL2_HUMAN GBRL2_HUMAN] Ubiquitin-like modifier involved in intra-Golgi traffic. Modulates intra-Golgi transport through coupling between NSF activity and SNAREs activation. It first stimulates the ATPase activity of NSF which in turn stimulates the association with GOSR1 (By similarity). Involved in autophagy. Plays a role in mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria to a basal level to fulfill cellular energy requirements and preventing excess ROS production. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation.<ref>PMID:20418806</ref> <ref>PMID:23209295</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	ABBREVIATIONS: A:C autophagic membrane:cytosol; ALS amyotrophic lateral sclerosis; ATG4 autophagy related 4; Atg8 autophagy related 8; BafA1 bafilomycin A1; BNIP3L/Nix BCL2 interacting protein 3 like; CALCOCO2/NDP52 calcium binding and coiled-coil domain 2; EBSS Earle's balanced salt solution; GABARAP GABA type A receptor-associated protein; GST glutathione S transferase; HKO hexa knockout; Kd dissociation constant; LIR LC3-interacting region; MAP1LC3/LC3 microtubule associated protein 1 light chain 3; NLS nuclear localization signal/sequence; PE phosphatidylethanolamine; SpHfl1 Schizosaccharomyces pombeorganic solute transmembrane transporter; SQSTM1/p62 SQSTM1/p62; TARDBP/TDP-43 TAR DNA binding protein; TKO triple knockout.

-	~~Authors~~:	+	Development of new tools to study membrane-anchored mammalian Atg8 proteins.,Park SW, Jeon P, Yamasaki A, Lee HE, Choi H, Mun JY, Jun YW, Park JH, Lee SH, Lee SK, Lee YK, Song HK, Lazarou M, Cho DH, Komatsu M, Noda NN, Jang DJ, Lee JA Autophagy. 2022 Oct 17:1-20. doi: 10.1080/15548627.2022.2132040. PMID:36250672<ref>PMID:36250672</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 7yo8" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Schizosaccharomyces pombe]]
		+	[[Category: Noda NN]]
		+	[[Category: Yamasaki A]]

OCA at 15:20, 7 September 2022

2022-09-07T15:20:33Z

←Older revision		Revision as of 15:20, 7 September 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7yo8 is ON HOLD	+	The entry 7yo8 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7yo8" [edit=sysop:move=sysop]

2022-08-10T03:46:43Z

Protected "7yo8" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:46, 10 August 2022

OCA: New page: '''Unreleased structure''' The entry 7yo8 is ON HOLD Authors: Description: Category: Unreleased Structures

2022-08-10T03:46:42Z

New page: '''Unreleased structure''' The entry 7yo8 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7yo8 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]