OCA at 20:16, 16 November 2022

2022-11-16T20:16:07Z

←Older revision		Revision as of 20:16, 16 November 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 8dfv is ~~ON HOLD until 2024~~-06-22	+	==Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex IIa==
		+	<StructureSection load='8dfv' size='340' side='right'caption='[[8dfv]], [[Resolution\|resolution]] 3.06Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8dfv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8DFV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8DFV FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8dfv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8dfv OCA], [https://pdbe.org/8dfv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8dfv RCSB], [https://www.ebi.ac.uk/pdbsum/8dfv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8dfv ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/DCR1_DROME DCR1_DROME] Essential for RNA interference (RNAi); double-stranded RNA (dsRNA) induces potent and specific gene silencing. RNAi is mediated by the RNA-induced silencing complex (RISC), a sequence-specific, multicomponent nuclease that destroys or silences messenger RNAs homologous to the silencing trigger. May carry out the initiation step of RNAi by cleaving dsRNA to produce 22 bp dsRNAs (siRNAs) which target the selective destruction of homologous RNAs. During embryogenesis, involved in germline fate determination.<ref>PMID:11201747</ref> <ref>PMID:11498593</ref> <ref>PMID:16949822</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In animals and plants, Dicer enzymes collaborate with double-stranded RNA-binding domain (dsRBD) proteins to convert precursor-microRNAs (pre-miRNAs) into miRNA duplexes. We report six cryo-EM structures of Drosophila Dicer-1 that show how Dicer-1 and its partner LoqsPB cooperate (1) before binding pre-miRNA, (2) after binding and in a catalytically competent state, (3) after nicking one arm of the pre-miRNA, and (4) following complete dicing and initial product release. Our reconstructions suggest that pre-miRNA binds a rare, open conformation of the Dicer1LoqsPB heterodimer. The Dicer-1 dsRBD and three LoqsPB dsRBDs form a tight belt around the pre-miRNA, distorting the RNA helix to place the scissile phosphodiester bonds in the RNase III active sites. Pre-miRNA cleavage shifts the dsRBDs and partially closes Dicer-1, which may promote product release. Our data suggest a model for how the Dicer1LoqsPB complex affects a complete cycle of pre-miRNA recognition, stepwise endonuclease cleavage, and product release.

-	~~Authors:~~ Jouravleva, K., Golovenko, D., Demo, G., Dutcher, ~~R.C., Tanaka~~ Hall~~, T.M.~~, Zamore, P.D., ~~Korostelev, A.A~~.	+	Structural basis of microRNA biogenesis by Dicer-1 and its partner protein Loqs-PB.,Jouravleva K, Golovenko D, Demo G, Dutcher RC, Hall TMT, Zamore PD, Korostelev AA Mol Cell. 2022 Nov 3;82(21):4049-4063.e6. doi: 10.1016/j.molcel.2022.09.002. Epub, 2022 Sep 30. PMID:36182693<ref>PMID:36182693</ref>

-	~~Description: Structural Basis~~ of ~~MicroRNA Biogenesis by Dicer~~-~~1 and Its Partner Protein Loqs~~-~~PB -complex IIa~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: ~~Tanaka Hall, T.M~~]]	+	<div class="pdbe-citations 8dfv" style="background-color:#fffaf0;"></div>
-	[[Category: Demo, G]]	+	== References ==
-	[[Category: Golovenko, D]]	+	<references/>
-	[[Category: ~~Korostelev, A.A~~]]	+	__TOC__
-	[[Category: ~~Dutcher, R.C~~]]	+	</StructureSection>
-	[[Category: ~~Jouravleva, K~~]]	+	[[Category: Drosophila melanogaster]]
-	[[Category: Zamore~~, P.D~~]]	+	[[Category: Large Structures]]
		+	[[Category: Demo G]]
		+	[[Category: Dutcher RC]]
		+	[[Category: Golovenko D]]
		+	[[Category: Jouravleva K]]
		+	[[Category: Korostelev AA]]
		+	[[Category: Tanaka Hall TM]]
		+	[[Category: Zamore PD]]

OCA at 03:59, 18 August 2022

2022-08-18T03:59:28Z

←Older revision		Revision as of 03:59, 18 August 2022
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8dfv is ON HOLD	+	The entry 8dfv is ON HOLD until 2024-06-22

	Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A.		Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A.

OCA: Protected "8dfv" [edit=sysop:move=sysop]

2022-06-29T06:33:27Z

Protected "8dfv" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:33, 29 June 2022

OCA: New page: '''Unreleased structure''' The entry 8dfv is ON HOLD Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A. Description: Str...

2022-06-29T06:33:26Z

New page: '''Unreleased structure''' The entry 8dfv is ON HOLD Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A. Description: Str...

New page

'''Unreleased structure'''

The entry 8dfv is ON HOLD

Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A.

Description: Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB -complex IIa
[[Category: Unreleased Structures]]
[[Category: Tanaka Hall, T.M]]
[[Category: Demo, G]]
[[Category: Golovenko, D]]
[[Category: Korostelev, A.A]]
[[Category: Dutcher, R.C]]
[[Category: Jouravleva, K]]
[[Category: Zamore, P.D]]

8dfv - Revision history

OCA at 20:16, 16 November 2022

OCA at 03:59, 18 August 2022

OCA: Protected "8dfv" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8dfv is ON HOLD Authors: Jouravleva, K., Golovenko, D., Demo, G., Dutcher, R.C., Tanaka Hall, T.M., Zamore, P.D., Korostelev, A.A. Description: Str...