8e5e - Revision history

OCA at 06:21, 19 July 2023

2023-07-19T06:21:24Z

←Older revision		Revision as of 06:21, 19 July 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[8e5e]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_cenocepacia Burkholderia cenocepacia] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8E5E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8E5E FirstGlance]. <br>		<table><tr><td colspan='2'>[[8e5e]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_cenocepacia Burkholderia cenocepacia] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8E5E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8E5E FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.62Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8e5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8e5e OCA], [https://pdbe.org/8e5e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8e5e RCSB], [https://www.ebi.ac.uk/pdbsum/8e5e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8e5e ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8e5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8e5e OCA], [https://pdbe.org/8e5e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8e5e RCSB], [https://www.ebi.ac.uk/pdbsum/8e5e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8e5e ProSAT]</span></td></tr>
	</table>		</table>

OCA at 04:04, 25 May 2023

2023-05-25T04:04:22Z

←Older revision		Revision as of 04:04, 25 May 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8e5e is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of double-stranded DNA deaminase toxin DddA in complex with DNA with the target cytosine flipped into the active site==
-		+	<StructureSection load='8e5e' size='340' side='right'caption='[[8e5e]], [[Resolution\|resolution]] 2.62Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[8e5e]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_cenocepacia Burkholderia cenocepacia] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8E5E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8E5E FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8e5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8e5e OCA], [https://pdbe.org/8e5e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8e5e RCSB], [https://www.ebi.ac.uk/pdbsum/8e5e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8e5e ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/DDDA_BURC1 DDDA_BURC1] Toxic component of a toxin-immunity protein module, which functions as a cellular contact-dependent growth inhibition (CDI) system. CDI modules allow bacteria to communicate with and inhibit the growth of closely related neighboring bacteria in a contact-dependent fashion. Bacteria that have this module inhibit or kill bacteria without it, giving them a growth advantage. Probably specifically inhibited by cognate immunity protein DddI (Probable). The C-terminal 163 residue fragment has double-stranded DNA cytidine deaminase activity; it does not deaminate ssDNA, ssRNA or dsRNA. Leads to C:G to T:A conversions in deaminated DNA. Preferentially deaminates 5'-TC-3' substrates (PubMed:32641830).<ref>PMID:32641830</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Burkholderia cenocepacia]]
		+	[[Category: Large Structures]]
		+	[[Category: Synthetic construct]]
		+	[[Category: Aihara H]]
		+	[[Category: Shi K]]
		+	[[Category: Yin LL]]

OCA at 05:46, 14 September 2022

2022-09-14T05:46:01Z

←Older revision		Revision as of 05:46, 14 September 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8e5e is ON HOLD	+	The entry 8e5e is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "8e5e" [edit=sysop:move=sysop]

2022-08-31T05:34:55Z

Protected "8e5e" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:34, 31 August 2022

OCA: New page: '''Unreleased structure''' The entry 8e5e is ON HOLD Authors: Description: Category: Unreleased Structures

2022-08-31T05:34:54Z

New page: '''Unreleased structure''' The entry 8e5e is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8e5e is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]