http://52.214.119.220/wiki/index.php?action=history&feed=atom&title=8fai 8fai - Revision history 2026-04-07T14:06:56Z Revision history for this page on the wiki MediaWiki 1.11.2 http://52.214.119.220/wiki/index.php?title=8fai&diff=4086764&oldid=prev OCA at 13:13, 13 March 2024 2024-03-13T13:13:55Z <p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 13:13, 13 March 2024</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''Unreleased structure'''</div></td><td colspan="2">&nbsp;</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">The entry </del>8fai is <del style="color: red; font-weight: bold; text-decoration: none;">ON HOLD until Paper Publication</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">==Cryo-EM structure of the Agrobacterium T-pilus==</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>&#160;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">&lt;StructureSection load='</ins>8fai<ins style="color: red; font-weight: bold; text-decoration: none;">' size='340' side='right'caption='[[8fai]], [[Resolution|resolution]] 3.00&amp;Aring;' scene=''&gt;</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">Authors</del>: <del style="color: red; font-weight: bold; text-decoration: none;">Kreida</del>, <del style="color: red; font-weight: bold; text-decoration: none;">S.</del>, <del style="color: red; font-weight: bold; text-decoration: none;">Narita</del>, <del style="color: red; font-weight: bold; text-decoration: none;">A.</del>, <del style="color: red; font-weight: bold; text-decoration: none;">Johnson</del>, <del style="color: red; font-weight: bold; text-decoration: none;">M</del>.<del style="color: red; font-weight: bold; text-decoration: none;">D</del>., <del style="color: red; font-weight: bold; text-decoration: none;">Tocheva, E</del>.<del style="color: red; font-weight: bold; text-decoration: none;">I</del>., <del style="color: red; font-weight: bold; text-decoration: none;">Das, A</del>., <del style="color: red; font-weight: bold; text-decoration: none;">Jensen</del>, <del style="color: red; font-weight: bold; text-decoration: none;">G</del>.<del style="color: red; font-weight: bold; text-decoration: none;">J</del>., <del style="color: red; font-weight: bold; text-decoration: none;">Ghosal, D</del>.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">== Structural highlights ==</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>&#160;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">&lt;table&gt;&lt;tr&gt;&lt;td colspan='2'&gt;[[8fai]] </ins>is <ins style="color: red; font-weight: bold; text-decoration: none;">a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FAI OCA]. For a &lt;b&gt;guided tour on the structure components&lt;/b&gt; use [https://proteopedia.org/fgij/fg.htm?mol=8FAI FirstGlance]. &lt;br&gt;</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">Description</del>: <del style="color: red; font-weight: bold; text-decoration: none;">Cryo-EM structure of </del>the <del style="color: red; font-weight: bold; text-decoration: none;">Agrobacterium </del>T-<del style="color: red; font-weight: bold; text-decoration: none;">pilus</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">&lt;/td&gt;&lt;/tr&gt;&lt;tr id='method'&gt;&lt;td class=&quot;sblockLbl&quot;&gt;&lt;b&gt;[[Empirical_models|Method:]]&lt;/b&gt;&lt;/td&gt;&lt;td class=&quot;sblockDat&quot; id=&quot;methodDat&quot;&gt;Electron Microscopy, [[Resolution|Resolution]] 3&amp;#8491;&lt;/td&gt;&lt;/tr&gt;</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category: <del style="color: red; font-weight: bold; text-decoration: none;">Unreleased </del>Structures]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">&lt;tr id='ligand'&gt;&lt;td class=&quot;sblockLbl&quot;&gt;&lt;b&gt;[[Ligand|Ligands</ins>:<ins style="color: red; font-weight: bold; text-decoration: none;">]]&lt;/b&gt;&lt;/td&gt;&lt;td class=&quot;sblockDat&quot; id=&quot;ligandDat&quot;&gt;&lt;scene name='pdbligand=XL0:(7Z</ins>,<ins style="color: red; font-weight: bold; text-decoration: none;">19R</ins>,<ins style="color: red; font-weight: bold; text-decoration: none;">22S</ins>,<ins style="color: red; font-weight: bold; text-decoration: none;">25R)-22</ins>,<ins style="color: red; font-weight: bold; text-decoration: none;">25</ins>,<ins style="color: red; font-weight: bold; text-decoration: none;">26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacos-7-en-19-yl+(9Z)-octadec-9-enoate'&gt;XL0&lt;/scene&gt;&lt;/td&gt;&lt;/tr&gt;</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category: <del style="color: red; font-weight: bold; text-decoration: none;">Ghosal, D</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">&lt;tr id='resources'&gt;&lt;td class=&quot;sblockLbl&quot;&gt;&lt;b&gt;Resources:&lt;/b&gt;&lt;/td&gt;&lt;td class=&quot;sblockDat&quot;&gt;&lt;span class='plainlinks'&gt;[https://proteopedia</ins>.<ins style="color: red; font-weight: bold; text-decoration: none;">org/fgij/fg</ins>.<ins style="color: red; font-weight: bold; text-decoration: none;">htm?mol=8fai FirstGlance]</ins>, <ins style="color: red; font-weight: bold; text-decoration: none;">[http://oca</ins>.<ins style="color: red; font-weight: bold; text-decoration: none;">weizmann</ins>.<ins style="color: red; font-weight: bold; text-decoration: none;">ac.il/oca-bin/ocaids?id=8fai OCA]</ins>, <ins style="color: red; font-weight: bold; text-decoration: none;">[https://pdbe</ins>.<ins style="color: red; font-weight: bold; text-decoration: none;">org/8fai PDBe]</ins>, <ins style="color: red; font-weight: bold; text-decoration: none;">[https://www.rcsb.org/pdb/explore.do?structureId=8fai RCSB]</ins>, <ins style="color: red; font-weight: bold; text-decoration: none;">[https://www</ins>.<ins style="color: red; font-weight: bold; text-decoration: none;">ebi</ins>.<ins style="color: red; font-weight: bold; text-decoration: none;">ac.uk/pdbsum/8fai PDBsum]</ins>, <ins style="color: red; font-weight: bold; text-decoration: none;">[https://prosat</ins>.<ins style="color: red; font-weight: bold; text-decoration: none;">h-its.org/prosat/prosatexe?pdbcode=8fai ProSAT]&lt;/span&gt;&lt;/td&gt;&lt;/tr&gt;</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category: <del style="color: red; font-weight: bold; text-decoration: none;">Johnson, M.</del>D]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">&lt;/table&gt;</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category: <del style="color: red; font-weight: bold; text-decoration: none;">Narita, A</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">== Function ==</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category: <del style="color: red; font-weight: bold; text-decoration: none;">Kreida, S</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[https</ins>:<ins style="color: red; font-weight: bold; text-decoration: none;">//www.uniprot.org/uniprot/VIRB2_AGRFC VIRB2_AGRFC] VirB proteins are suggested to act at </ins>the <ins style="color: red; font-weight: bold; text-decoration: none;">bacterial surface and there play an important role in directing </ins>T-<ins style="color: red; font-weight: bold; text-decoration: none;">DNA transfer to plant cells.</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category: <del style="color: red; font-weight: bold; text-decoration: none;">Das, A</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">__TOC__</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category: <del style="color: red; font-weight: bold; text-decoration: none;">Tocheva, E.I</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">&lt;/StructureSection&gt;</ins></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Category: <del style="color: red; font-weight: bold; text-decoration: none;">Jensen, G.J</del>]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">[[Category: Agrobacterium tumefaciens]]</ins></div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category: <ins style="color: red; font-weight: bold; text-decoration: none;">Large </ins>Structures]]</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category: <ins style="color: red; font-weight: bold; text-decoration: none;">Das A</ins>]]</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category: <ins style="color: red; font-weight: bold; text-decoration: none;">Ghosal </ins>D]]</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category: <ins style="color: red; font-weight: bold; text-decoration: none;">Jensen GJ</ins>]]</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category: <ins style="color: red; font-weight: bold; text-decoration: none;">Johnson MD</ins>]]</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category: <ins style="color: red; font-weight: bold; text-decoration: none;">Kreida S</ins>]]</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category: <ins style="color: red; font-weight: bold; text-decoration: none;">Narita A</ins>]]</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Category: <ins style="color: red; font-weight: bold; text-decoration: none;">Tocheva EI</ins>]]</div></td></tr> </table> OCA http://52.214.119.220/wiki/index.php?title=8fai&diff=3693815&oldid=prev OCA at 05:47, 11 January 2023 2023-01-11T05:47:14Z <p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 05:47, 11 January 2023</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Unreleased structure'''</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Unreleased structure'''</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>The entry 8fai is ON HOLD </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>The entry 8fai is ON HOLD <ins style="color: red; font-weight: bold; text-decoration: none;"> until Paper Publication</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Authors: Kreida, S., Narita, A., Johnson, M.D., Tocheva, E.I., Das, A., Jensen, G.J., Ghosal, D.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Authors: Kreida, S., Narita, A., Johnson, M.D., Tocheva, E.I., Das, A., Jensen, G.J., Ghosal, D.</div></td></tr> </table> OCA http://52.214.119.220/wiki/index.php?title=8fai&diff=3676257&oldid=prev OCA: Protected "8fai" [edit=sysop:move=sysop] 2022-12-07T05:34:49Z <p>Protected &quot;<a href="/wiki/index.php/8fai" title="8fai">8fai</a>&quot; [edit=sysop:move=sysop]</p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 05:34, 7 December 2022</td> </tr> </table> OCA http://52.214.119.220/wiki/index.php?title=8fai&diff=3676256&oldid=prev OCA: New page: '''Unreleased structure''' The entry 8fai is ON HOLD Authors: Kreida, S., Narita, A., Johnson, M.D., Tocheva, E.I., Das, A., Jensen, G.J., Ghosal, D. Description: Cryo-EM structure of ... 2022-12-07T05:34:44Z <p>New page: '''Unreleased structure''' The entry 8fai is ON HOLD Authors: Kreida, S., Narita, A., Johnson, M.D., Tocheva, E.I., Das, A., Jensen, G.J., Ghosal, D. Description: Cryo-EM structure of ...</p> <p><b>New page</b></p><div>'''Unreleased structure'''<br /> <br /> The entry 8fai is ON HOLD <br /> <br /> Authors: Kreida, S., Narita, A., Johnson, M.D., Tocheva, E.I., Das, A., Jensen, G.J., Ghosal, D.<br /> <br /> Description: Cryo-EM structure of the Agrobacterium T-pilus<br /> [[Category: Unreleased Structures]]<br /> [[Category: Ghosal, D]]<br /> [[Category: Johnson, M.D]]<br /> [[Category: Narita, A]]<br /> [[Category: Kreida, S]]<br /> [[Category: Das, A]]<br /> [[Category: Tocheva, E.I]]<br /> [[Category: Jensen, G.J]]</div> OCA