8fui - Revision history

OCA at 10:48, 22 May 2024

2024-05-22T10:48:34Z

←Older revision		Revision as of 10:48, 22 May 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[8fui]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FUI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8FUI FirstGlance]. <br>		<table><tr><td colspan='2'>[[8fui]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FUI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8FUI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=Y9R:N-{(2S,3R)-4-[(4-aminobenzene-1-sulfonyl)(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}-4-methyl-3-{[(4P)-4-(pyridin-3-yl)pyrimidin-2-yl]amino}benzamide'>Y9R</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.25Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=Y9R:N-{(2S,3R)-4-[(4-aminobenzene-1-sulfonyl)(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}-4-methyl-3-{[(4P)-4-(pyridin-3-yl)pyrimidin-2-yl]amino}benzamide'>Y9R</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8fui FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8fui OCA], [https://pdbe.org/8fui PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8fui RCSB], [https://www.ebi.ac.uk/pdbsum/8fui PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8fui ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8fui FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8fui OCA], [https://pdbe.org/8fui PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8fui RCSB], [https://www.ebi.ac.uk/pdbsum/8fui PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8fui ProSAT]</span></td></tr>
	</table>		</table>

OCA at 04:06, 25 May 2023

2023-05-25T04:06:02Z

←Older revision		Revision as of 04:06, 25 May 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8fui is ~~ON HOLD until Paper~~ Publication	+	==HIV-1 wild type protease with GRL-02519A, with N-(2,5-dimethylphenyl)-4-(pyridin-3-yl)pyrimidin-2-amine as P2-P3 group==
		+	<StructureSection load='8fui' size='340' side='right'caption='[[8fui]], [[Resolution\|resolution]] 1.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8fui]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FUI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8FUI FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=Y9R:N-{(2S,3R)-4-[(4-aminobenzene-1-sulfonyl)(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}-4-methyl-3-{[(4P)-4-(pyridin-3-yl)pyrimidin-2-yl]amino}benzamide'>Y9R</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8fui FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8fui OCA], [https://pdbe.org/8fui PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8fui RCSB], [https://www.ebi.ac.uk/pdbsum/8fui PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8fui ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5RZ08_9HIV1 Q5RZ08_9HIV1]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Structure-based design, synthesis, X-ray structural studies, and biological evaluation of a new series of potent HIV-1 protease inhibitors are described. These inhibitors contain various pyridyl-pyrimidine, aryl thiazole or alkylthiazole derivatives as the P2 ligands in combination with darunavir-like hydroxyethylamine sulfonamide isosteres. These heterocyclic ligands are inherent to kinase inhibitor drugs, such as nilotinib and imatinib. These ligands are designed to make hydrogen bonding interactions with the backbone atoms in the S2 subsite of HIV-1 protease. Various benzoic acid derivatives have been synthesized and incorporation of these ligands provided potent inhibitors that exhibited subnanomolar level protease inhibitory activity and low nanomolar level antiviral activity. Two high resolution X-ray structures of inhibitor-bound HIV-1 protease were determined. These structures provided important ligand-binding site interactions for further optimization of this class of protease inhibitors.

-	~~Authors~~: ~~Wang~~, Y.-F., Wong-Sam, A~~.E.~~, ~~Ghosh~~, ~~A.K.~~, Weber, I.T.	+	Exploration of imatinib and nilotinib-derived templates as the P2-Ligand for HIV-1 protease inhibitors: Design, synthesis, protein X-ray structural studies, and biological evaluation.,Ghosh AK, Mishevich JL, Kovela S, Shaktah R, Ghosh AK, Johnson M, Wang YF, Wong-Sam A, Agniswamy J, Amano M, Takamatsu Y, Hattori SI, Weber IT, Mitsuya H Eur J Med Chem. 2023 Jul 5;255:115385. doi: 10.1016/j.ejmech.2023.115385. Epub , 2023 Apr 21. PMID:37150084<ref>PMID:37150084</ref>

-	~~Description: HIV-1 wild type protease with GRL-02519A~~, ~~with N~~-~~(2,5~~-~~dimethylphenyl)-4-(pyridin-3-yl)pyrimidin-2-amine as P2-P3 group~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: Ghosh~~, A.K~~]]	+	<div class="pdbe-citations 8fui" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Weber, I.T~~]]	+	== References ==
-	[[Category: ~~Wong-Sam, A.E~~]]	+	<references/>
-	[[Category: ~~Wang, Y.~~-F]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Human immunodeficiency virus 1]]
		+	[[Category: Large Structures]]
		+	[[Category: Ghosh AK]]
		+	[[Category: Wang Y-F]]
		+	[[Category: Weber IT]]
		+	[[Category: Wong-Sam AE]]

OCA: Protected "8fui" [edit=sysop:move=sysop]

2023-01-25T05:00:13Z

Protected "8fui" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:00, 25 January 2023

OCA: New page: '''Unreleased structure''' The entry 8fui is ON HOLD until Paper Publication Authors: Wang, Y.-F., Wong-Sam, A.E., Ghosh, A.K., Weber, I.T. Description: HIV-1 wild type protease with G...

2023-01-25T05:00:12Z

New page: '''Unreleased structure''' The entry 8fui is ON HOLD until Paper Publication Authors: Wang, Y.-F., Wong-Sam, A.E., Ghosh, A.K., Weber, I.T. Description: HIV-1 wild type protease with G...

New page

'''Unreleased structure'''

The entry 8fui is ON HOLD until Paper Publication

Authors: Wang, Y.-F., Wong-Sam, A.E., Ghosh, A.K., Weber, I.T.

Description: HIV-1 wild type protease with GRL-02519A, with N-(2,5-dimethylphenyl)-4-(pyridin-3-yl)pyrimidin-2-amine as P2-P3 group
[[Category: Unreleased Structures]]
[[Category: Ghosh, A.K]]
[[Category: Weber, I.T]]
[[Category: Wong-Sam, A.E]]
[[Category: Wang, Y.-F]]