OCA at 07:34, 18 January 2023

2023-01-18T07:34:27Z

←Older revision		Revision as of 07:34, 18 January 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8gq5 is ~~ON HOLD until Paper~~ Publication	+	==Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure==
		+	<StructureSection load='8gq5' size='340' side='right'caption='[[8gq5]], [[Resolution\|resolution]] 2.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8gq5]] is a 32 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Vicugna_pacos Vicugna pacos]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8GQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8GQ5 FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8gq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8gq5 OCA], [https://pdbe.org/8gq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8gq5 RCSB], [https://www.ebi.ac.uk/pdbsum/8gq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gq5 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SARM1_HUMAN SARM1_HUMAN] Negative regulator of MYD88- and TRIF-dependent toll-like receptor signaling pathway which plays a pivotal role in activating axonal degeneration following injury. Promotes Wallerian degeneration an injury-induced axonal death pathway which involves degeneration of an axon distal to the injury site. Can activate neuronal death in response to stress. Regulates dendritic arborization through the MAPK4-JNK pathway. Involved in innate immune response. Inhibits both TICAM1/TRIF- and MYD88-dependent activation of JUN/AP-1, TRIF-dependent activation of NF-kappa-B and IRF3, and the phosphorylation of MAPK14/p38.<ref>PMID:15123841</ref> <ref>PMID:16964262</ref> <ref>PMID:16985498</ref> <ref>PMID:20306472</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Sterile alpha (SAM) and Toll/interleukin-1 receptor (TIR) motif containing 1 (SARM1) is an autoinhibitory NAD-consuming enzyme that is activated by the accumulation of nicotinamide mononucleotide (NMN) during axonal injury. Its activation mechanism is not fully understood. Here, we generate a nanobody, Nb-C6, that specifically recognizes NMN-activated SARM1. Nb-C6 stains only the activated SARM1 in cells stimulated with CZ-48, a permeant mimetic of NMN, and partially activates SARM1 in vitro and in cells. Cryo-EM of NMN/SARM1/Nb-C6 complex shows an octameric structure with ARM domains bending significantly inward and swinging out together with TIR domains. Nb-C6 binds to SAM domain of the activated SARM1 and stabilized its ARM domain. Mass spectrometry analyses indicate that the activated SARM1 in solution is highly dynamic and that the neighboring TIRs form transient dimers via the surface close to one BB loop. We show that Nb-C6 is a valuable tool for studies of SARM1 activation.

-	~~Authors: Cai~~, Y., ~~Zhang~~, H.	+	A conformation-specific nanobody targeting the nicotinamide mononucleotide-activated state of SARM1.,Hou YN, Cai Y, Li WH, He WM, Zhao ZY, Zhu WJ, Wang Q, Mai X, Liu J, Lee HC, Stjepanovic G, Zhang H, Zhao YJ Nat Commun. 2022 Dec 22;13(1):7898. doi: 10.1038/s41467-022-35581-y. PMID:36550129<ref>PMID:36550129</ref>

-	~~Description: Human SARM1 bounded with NMN and Nanobody-C6~~, ~~double~~-~~layer structure~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Zhang, H~~]]	+	<div class="pdbe-citations 8gq5" style="background-color:#fffaf0;"></div>
-	[[Category: Cai, Y]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Vicugna pacos]]
		+	[[Category: Cai Y]]
		+	[[Category: Zhang H]]

OCA at 17:33, 19 October 2022

2022-10-19T17:33:41Z

←Older revision		Revision as of 17:33, 19 October 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8gq5 is ON HOLD	+	The entry 8gq5 is ON HOLD until Paper Publication

	Authors: Cai, Y., Zhang, H.		Authors: Cai, Y., Zhang, H.

OCA: Protected "8gq5" [edit=sysop:move=sysop]

2022-09-07T15:40:12Z

Protected "8gq5" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:40, 7 September 2022

OCA: New page: '''Unreleased structure''' The entry 8gq5 is ON HOLD Authors: Cai, Y., Zhang, H. Description: Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure [[Category: Unrelease...

2022-09-07T15:40:11Z

New page: '''Unreleased structure''' The entry 8gq5 is ON HOLD Authors: Cai, Y., Zhang, H. Description: Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure [[Category: Unrelease...

New page

'''Unreleased structure'''

The entry 8gq5 is ON HOLD

Authors: Cai, Y., Zhang, H.

Description: Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure
[[Category: Unreleased Structures]]
[[Category: Zhang, H]]
[[Category: Cai, Y]]

8gq5 - Revision history

OCA at 07:34, 18 January 2023

OCA at 17:33, 19 October 2022

OCA: Protected "8gq5" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8gq5 is ON HOLD Authors: Cai, Y., Zhang, H. Description: Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure [[Category: Unrelease...