OCA at 07:34, 22 November 2023

2023-11-22T07:34:14Z

←Older revision		Revision as of 07:34, 22 November 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 8ts5 is ~~ON HOLD until Paper~~ Publication	+	==Structure of the apo FabS1C_C1==
		+	<StructureSection load='8ts5' size='340' side='right'caption='[[8ts5]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8ts5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8TS5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8TS5 FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ts5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ts5 OCA], [https://pdbe.org/8ts5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ts5 RCSB], [https://www.ebi.ac.uk/pdbsum/8ts5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ts5 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The atomic-resolution structural information that X-ray crystallography can provide on the binding interface between a Fab and its cognate antigen is highly valuable for understanding the mechanism of interaction. However, many Fab:antigen complexes are recalcitrant to crystallization, making the endeavor a considerable effort with no guarantee of success. Consequently, there have been significant steps taken to increase the likelihood of Fab:antigen complex crystallization by altering the Fab framework. In this investigation, we applied the surface entropy reduction strategy coupled with phage-display technology to identify a set of surface substitutions that improve the propensity of a human Fab framework to crystallize. In addition, we showed that combining these surface substitutions with previously reported Crystal Kappa and elbow substitutions results in an extraordinary improvement in Fab and Fab:antigen complex crystallisability, revealing a strong synergistic relationship between these sets of substitutions. Through comprehensive Fab and Fab:antigen complex crystallization screenings followed by structure determination and analysis, we defined the roles that each of these substitutions play in facilitating crystallization and how they complement each other in the process. This article is protected by copyright. All rights reserved.

-	~~Authors~~: ~~Singer, A.U~~., Bruce, ~~H.A.~~, Blazer, L~~.L.~~, ~~Adams~~, ~~J.J.~~, ~~Sicheri~~, F., ~~Sidhu~~, S.S.	+	Engineered Antigen-Binding Fragments for Enhanced Crystallization of Antibody:Antigen Complexes.,Bruce HA, Singer AU, Filippova EV, Blazer LL, Adams JJ, Enderle L, Ben-David M, Radley EH, Mao DYL, Pau V, Orlicky S, Sicheri F, Kourinov I, Atwell S, Kossiakoff AA, Sidhu SS Protein Sci. 2023 Nov 9:e4824. doi: 10.1002/pro.4824. PMID:37945533<ref>PMID:37945533</ref>

-	~~Description: Structure~~ of the ~~apo FabS1C_C1~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: ~~Bruce, H.A~~]]	+	<div class="pdbe-citations 8ts5" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Singer, A.U~~]]	+	== References ==
-	[[Category: ~~Sidhu, S.S~~]]	+	<references/>
-	[[Category: ~~Adams, J.J~~]]	+	__TOC__
-	[[Category: Sicheri, F]]	+	</StructureSection>
-	[[Category: ~~Blazer, L.L~~]]	+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Adams JJ]]
		+	[[Category: Blazer LL]]
		+	[[Category: Bruce HA]]
		+	[[Category: Sicheri F]]
		+	[[Category: Sidhu SS]]
		+	[[Category: Singer AU]]

OCA at 12:28, 20 September 2023

2023-09-20T12:28:30Z

←Older revision		Revision as of 12:28, 20 September 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8ts5 is ON HOLD	+	The entry 8ts5 is ON HOLD until Paper Publication

	Authors: Singer, A.U., Bruce, H.A., Blazer, L.L., Adams, J.J., Sicheri, F., Sidhu, S.S.		Authors: Singer, A.U., Bruce, H.A., Blazer, L.L., Adams, J.J., Sicheri, F., Sidhu, S.S.

OCA: Protected "8ts5" [edit=sysop:move=sysop]

2023-08-16T07:01:05Z

Protected "8ts5" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:01, 16 August 2023

OCA: New page: '''Unreleased structure''' The entry 8ts5 is ON HOLD Authors: Singer, A.U., Bruce, H.A., Blazer, L.L., Adams, J.J., Sicheri, F., Sidhu, S.S. Description: Structure of the apo FabS1C_C1...

2023-08-16T07:01:04Z

New page: '''Unreleased structure''' The entry 8ts5 is ON HOLD Authors: Singer, A.U., Bruce, H.A., Blazer, L.L., Adams, J.J., Sicheri, F., Sidhu, S.S. Description: Structure of the apo FabS1C_C1...

New page

'''Unreleased structure'''

The entry 8ts5 is ON HOLD

Authors: Singer, A.U., Bruce, H.A., Blazer, L.L., Adams, J.J., Sicheri, F., Sidhu, S.S.

Description: Structure of the apo FabS1C_C1
[[Category: Unreleased Structures]]
[[Category: Bruce, H.A]]
[[Category: Singer, A.U]]
[[Category: Sidhu, S.S]]
[[Category: Adams, J.J]]
[[Category: Sicheri, F]]
[[Category: Blazer, L.L]]

8ts5 - Revision history

OCA at 07:34, 22 November 2023

OCA at 12:28, 20 September 2023

OCA: Protected "8ts5" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8ts5 is ON HOLD Authors: Singer, A.U., Bruce, H.A., Blazer, L.L., Adams, J.J., Sicheri, F., Sidhu, S.S. Description: Structure of the apo FabS1C_C1...