Asparaginase 3D structures - Revision history

Michal Harel at 09:59, 28 May 2024

2024-05-28T09:59:14Z

←Older revision		Revision as of 09:59, 28 May 2024
Line 57:		Line 57:

	**[[1wsa]] – WsASP precursor <br />		**[[1wsa]] – WsASP precursor <br />
-	**[[6eok]], [[6uod~~]],~~ ]], [[7a0u]], [[7p9c]] - EcASP (mutant)<br />	+	**[[6eok]], [[6uod]], [[7a0u]], [[7p9c]] - EcASP (mutant)<br />
	**[[1ihd]], [[1jaz]], [[1jja]], [[5mq5]], [[6eok]] - EcASP (mutant)<br />		**[[1ihd]], [[1jaz]], [[1jja]], [[5mq5]], [[6eok]] - EcASP (mutant)<br />
	**[[7os3]], [[7os5]], [[7os6]], [[7ou1]], [[7oz6]] - ASP – ''Rhizobium etli'' <br />		**[[7os3]], [[7os5]], [[7os6]], [[7ou1]], [[7oz6]] - ASP – ''Rhizobium etli'' <br />

Michal Harel at 06:32, 12 October 2022

2022-10-12T06:32:44Z

←Older revision		Revision as of 06:32, 12 October 2022
Line 15:		Line 15:
	**[[2ocd]] - ASP – ''Vibrio cholera''<br />		**[[2ocd]] - ASP – ''Vibrio cholera''<br />
	**[[2p2d]] - EcASP – ''Eschericia coli''<br />		**[[2p2d]] - EcASP – ''Eschericia coli''<br />
-	**[[3ntx]] - ~~ASP~~ – ''Yersinia pestis''<br />	+	**[[3ntx]] - YpASP – ''Yersinia pestis''<br />
		+	**[[7r69]], [[7r6a]], [[7r6b]] – YpASP (mutant) <br />
	**[[3nxk]] - ASP – ''Campylobacter jejuni''<br />		**[[3nxk]] - ASP – ''Campylobacter jejuni''<br />
	**[[4q0m]], [[4ra6]], [[4ra9]], [[5cbp]] – PfASP – ''Pyrococcus furiosus''<br />		**[[4q0m]], [[4ra6]], [[4ra9]], [[5cbp]] – PfASP – ''Pyrococcus furiosus''<br />
Line 21:		Line 22:
	**[[6rud]] – WsASP - ''Wolinella succinogenes'' <br />		**[[6rud]] – WsASP - ''Wolinella succinogenes'' <br />
	**[[6syh]] – WsASP (mutant) <br />		**[[6syh]] – WsASP (mutant) <br />
		+	**[[7cb4]] – BpASP – ''Bacillus paralicheniformis''<br />
		+	**[[7cbw]] – BpASP (mutant) <br />

	*ASP I complex		*ASP I complex
Line 43:		Line 46:
	**[[4nje]] – ASP + Asp – ''Pyrococcus horikoshii''<br />		**[[4nje]] – ASP + Asp – ''Pyrococcus horikoshii''<br />
	**[[5b5u]], [[5b74]] - PfLASP + peptide<br />		**[[5b5u]], [[5b74]] - PfLASP + peptide<br />
-	**[[5i3z]], [[6pae]] - ASP (mutant) + Asp – ''Dickeya chrysanthemi'' <br />	+	**[[5i3z]], [[6pae]], [[7u6m]] - ASP (mutant) + Asp – ''Dickeya chrysanthemi'' <br />
	**[[5k4g]] - WsASP + L-Asp <br />		**[[5k4g]] - WsASP + L-Asp <br />
	**[[5k3o]], [[6rue]], [[6ruf]] - WsASP (mutant) + L-Asp <br />		**[[5k3o]], [[6rue]], [[6ruf]] - WsASP (mutant) + L-Asp <br />
	**[[5k4h]] - WsASP + L-Glu <br />		**[[5k4h]] - WsASP + L-Glu <br />
	**[[5k45]] - WsASP (mutant) + L-Glu <br />		**[[5k45]] - WsASP (mutant) + L-Glu <br />
		+	**[[7c8q]], [[7c91]], [[7cbr]] - BpASP (mutant) + D-Asn <br />
		+	**[[7c8q]], [[7c8x]], [[7cbu]] - BpASP (mutant) + L-AA <br />

	*ASP II		*ASP II

	**[[1wsa]] – WsASP precursor <br />		**[[1wsa]] – WsASP precursor <br />
-	**[[6eok]], [[6uod]] - EcASP (mutant)<br />	+	**[[6eok]], [[6uod]], ]], [[7a0u]], [[7p9c]] - EcASP (mutant)<br />
-	**[[1ihd]], [[1jaz]], [[1jja]], [[5mq5]], [[6eok]] - EcASP (mutant)	+	**[[1ihd]], [[1jaz]], [[1jja]], [[5mq5]], [[6eok]] - EcASP (mutant)<br />
		+	**[[7os3]], [[7os5]], [[7os6]], [[7ou1]], [[7oz6]] - ASP – ''Rhizobium etli'' <br />

	*ASP II complex		*ASP II complex

Michal Harel at 06:32, 21 April 2021

2021-04-21T06:32:51Z

←Older revision

Revision as of 06:32, 21 April 2021

Michal Harel at 10:15, 20 April 2021

2021-04-20T10:15:34Z

←Older revision		Revision as of 10:15, 20 April 2021
Line 70:		Line 70:
	*Glycosylasparaginase or N(4)-(β-N-acetylglucosaminyl)-L-asparaginase		*Glycosylasparaginase or N(4)-(β-N-acetylglucosaminyl)-L-asparaginase

-	**[[9gaa]] - EmGASP – Elizabethkingia meningoseptica<br />	+	**[[9gaa]] - EmGASP – ''Elizabethkingia meningoseptica''<br />
	**[[9gac]], [[9gaf]], [[5v2i]], [[3ljq]] - EmGASP (mutant) <br />		**[[9gac]], [[9gaf]], [[5v2i]], [[3ljq]] - EmGASP (mutant) <br />
	**[[2gl9]], [[4r4y]] - EmGASP (mutant) + Asn<br />		**[[2gl9]], [[4r4y]] - EmGASP (mutant) + Asn<br />

Michal Harel at 10:14, 20 April 2021

2021-04-20T10:14:36Z

←Older revision		Revision as of 10:14, 20 April 2021
Line 6:		Line 6:
	*ASP I		*ASP I

		+	**[[4pvq]], [[4et0]] - hASP – human<br />
		+	**[[3tkj]] - hASP (mutant) <br />
		+	**[[4pu6]], [[4pv2]], [[4pv3]] – ASP – bean<br />
		+	**[[2gez]] - ASP – yellow lupine<br />
	**[[1hfj]], [[1hfk]], [[1o7j]] - ErcASP – ''Erwinia chrysanthemi''<br />		**[[1hfj]], [[1hfk]], [[1o7j]] - ErcASP – ''Erwinia chrysanthemi''<br />
	**[[1wnf]], [[1wls]] - ASP – ''Pyrococcus horikoshii''<br />		**[[1wnf]], [[1wls]] - ASP – ''Pyrococcus horikoshii''<br />
	**[[1zcf]] - PaASP – ''Pectobacterium atrosepticum''<br />		**[[1zcf]] - PaASP – ''Pectobacterium atrosepticum''<br />
-	**[[2gez]] - ASP – yellow lupine<br />
	**[[2ocd]] - ASP – ''Vibrio cholera''<br />		**[[2ocd]] - ASP – ''Vibrio cholera''<br />
	**[[2p2d]] - EcASP – ''Eschericia coli''<br />		**[[2p2d]] - EcASP – ''Eschericia coli''<br />
	**[[3ntx]] - ASP – ''Yersinia pestis''<br />		**[[3ntx]] - ASP – ''Yersinia pestis''<br />
	**[[3nxk]] - ASP – ''Campylobacter jejuni''<br />		**[[3nxk]] - ASP – ''Campylobacter jejuni''<br />
-	**[[4pvq]], [[4et0]] - hASP – human<br />
-	**[[3tkj]] - hASP (mutant) <br />
-	**[[4pu6]], [[4pv2]], [[4pv3]] – ASP – bean<br />
	**[[4q0m]], [[4ra6]], [[4ra9]], [[5cbp]] – PfASP – ''Pyrococcus furiosus''<br />		**[[4q0m]], [[4ra6]], [[4ra9]], [[5cbp]] – PfASP – ''Pyrococcus furiosus''<br />
	**[[5ot0]] - ASP – ''Thermococcus kodakarensis'' <br />		**[[5ot0]] - ASP – ''Thermococcus kodakarensis'' <br />
		+	**[[6syh]] – WsASP (mutant) - ''Wolinella succinogenes'' <br />

	*ASP I complex		*ASP I complex

		+	**[[4pvp]] - hASP + malonate<br />
		+	**[[4pvp]] - hASP + sulfate<br />
		+	**[[4pvr]], [[4pvs]] - hASP + AA<BR />
		+	**[[5dne]], [[5dnd]], [[5dnc]] – ASP (mutant) + asparagine – guinea pig<br />
	**[[1hfw]], [[5hw0]] - ErcASP + glutamate<br />		**[[1hfw]], [[5hw0]] - ErcASP + glutamate<br />
	**[[2hln]] - PaASP + glutamate<br />		**[[2hln]] - PaASP + glutamate<br />
Line 33:		Line 38:
	**[[2him]], [[2zal]] - EcASP + AA<BR />		**[[2him]], [[2zal]] - EcASP + AA<BR />
	**[[2p2n]] - EcASP + asparagine + AA<BR />		**[[2p2n]] - EcASP + asparagine + AA<BR />
		+	**[[6nxc]], [[6nxd]] - EcASP + citrate<br />
	**[[1jsl]], [[1jsr]] - ErcASP + norleucine<br />		**[[1jsl]], [[1jsr]] - ErcASP + norleucine<br />
-	**[[4pvp]] - hASP + malonate<br />
-	**[[4pvp]] - hASP + sulfate<br />
-	**[[4pvr]], [[4pvs]] - hASP + AA<BR />
	**[[4nje]] – ASP + Asp – ''Pyrococcus horikoshii''<br />		**[[4nje]] – ASP + Asp – ''Pyrococcus horikoshii''<br />
	**[[5b5u]], [[5b74]] - PfLASP + peptide<br />		**[[5b5u]], [[5b74]] - PfLASP + peptide<br />
-	**[[5i3z]] - ASP (mutant) + Asp – ''Dickeya chrysanthemi'' <br />	+	**[[5i3z]], [[6pae]] - ASP (mutant) + Asp – ''Dickeya chrysanthemi'' <br />
-	**[[5k4g]] - WsASP + L-Asp ~~- ''Wolinella succinogenes''~~ <br />	+	**[[5k4g]] - WsASP + L-Asp <br />
	**[[5k3o]] - WsASP (mutant) + L-Asp <br />		**[[5k3o]] - WsASP (mutant) + L-Asp <br />
	**[[5k4h]] - WsASP + L-Glu <br />		**[[5k4h]] - WsASP + L-Glu <br />
	**[[5k45]] - WsASP (mutant) + L-Glu <br />		**[[5k45]] - WsASP (mutant) + L-Glu <br />
-	**[[5dne]], [[5dnd]], [[5dnc]] – ASP (mutant) + asparagine – guinea pig<br />

	*ASP II		*ASP II
Line 50:		Line 52:
	**[[1wsa]] – WsASP precursor <br />		**[[1wsa]] – WsASP precursor <br />
	**[[6eok]] - EcASP (mutant)<br />		**[[6eok]] - EcASP (mutant)<br />
-	**[[1ihd]], [[1jaz]], [[1jja]], [[5mq5]] - EcASP (mutant)	+	**[[1ihd]], [[1jaz]], [[1jja]], [[5mq5]], [[6eok]] - EcASP (mutant)

	*ASP II complex		*ASP II complex

-	**[[3eca]], [[4eca]], [[1nns]] – EcASP + AA<BR />	+	**[[3eca]], [[4eca]], [[1nns]], [[6pab]], [[6pac]] – EcASP + AA<BR />
-	**[[1ho3]] - EcASP (mutant) + AA<BR />	+	**[[1ho3]], [[6pa2]], [[6pa4]], [[6paa]], [[6v24]], [[6v25]], [[6v26]], [[6v27]], [[6v28]], [[6v29]], [[6v2c]], [[2v2g]] - EcASP (mutant) + AA<BR />
		+	**[[6nx6]], [[6nx7]], [[6nx8]], [[6nx9]], [[6nxa]] - EcASP (mutant) + citrate<br />
		+	**[[6pa3]], [[6pa5]], [[6pa6]], [[6pa8]], [[6pa9]], [[6v2a]], [[6v2b]] - EcASP (mutant) + Asn<br />

	*Isoaspartyl peptidase/L-asparaginase		*Isoaspartyl peptidase/L-asparaginase

Michal Harel at 11:08, 21 March 2019

2019-03-21T11:08:18Z

←Older revision		Revision as of 11:08, 21 March 2019
Line 1:		Line 1:
-	==3D structures of ~~asparaginase~~==	+	==3D structures of [[Asparaginase]]==

	Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}		Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Line 74:		Line 74:
	**[[2zak]], [[3c17]] - EcASP precursor (mutant)		**[[2zak]], [[3c17]] - EcASP precursor (mutant)
	}}		}}
		+	[[Category: Topic Page]]

Michal Harel: New page: ==3D structures of asparaginase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *ASP I **1hfj, 1hfk, [[1...

2019-03-20T09:15:59Z

New page: ==3D structures of asparaginase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *ASP I **1hfj, 1hfk, [[1...

New page

==3D structures of asparaginase==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|

*ASP I

**[[1hfj]], [[1hfk]], [[1o7j]] - ErcASP – ''Erwinia chrysanthemi'' 
**[[1wnf]], [[1wls]] - ASP – ''Pyrococcus horikoshii'' 
**[[1zcf]] - PaASP – ''Pectobacterium atrosepticum'' 
**[[2gez]] - ASP – yellow lupine 
**[[2ocd]] - ASP – ''Vibrio cholera'' 
**[[2p2d]] - EcASP – ''Eschericia coli'' 
**[[3ntx]] - ASP – ''Yersinia pestis'' 
**[[3nxk]] - ASP – ''Campylobacter jejuni'' 
**[[4pvq]], [[4et0]] - hASP – human 
**[[3tkj]] - hASP (mutant) 
**[[4pu6]], [[4pv2]], [[4pv3]] – ASP – bean 
**[[4q0m]], [[4ra6]], [[4ra9]], [[5cbp]] – PfASP – ''Pyrococcus furiosus'' 
**[[5ot0]] - ASP – ''Thermococcus kodakarensis'' 

*ASP I complex

**[[1hfw]], [[5hw0]] - ErcASP + glutamate 
**[[2hln]] - PaASP + glutamate 
**[[1hg0]] - ErcASP + succinate 
**[[1hg1]] - ErcASP + D-AA 
**[[5f52]] - ErcASP + L-AA 
**[[5ilz]], [[5i48]], [[5i4b]] - ErcASP (mutant) + L-AA 
**[[2gvn]] - PaSP + AA 
**[[2jk0]] - ASP + AA – ''Pectobacterium carotovorum'' 
**[[2wlt]], [[2wt4]] - ASP + AA – ''Helicobacter pylori'' 
**[[2him]], [[2zal]] - EcASP + AA 
**[[2p2n]] - EcASP + asparagine + AA 
**[[1jsl]], [[1jsr]] - ErcASP + norleucine 
**[[4pvp]] - hASP + malonate 
**[[4pvp]] - hASP + sulfate 
**[[4pvr]], [[4pvs]] - hASP + AA 
**[[4nje]] – ASP + Asp – ''Pyrococcus horikoshii'' 
**[[5b5u]], [[5b74]] - PfLASP + peptide 
**[[5i3z]] - ASP (mutant) + Asp – ''Dickeya chrysanthemi'' 
**[[5k4g]] - WsASP + L-Asp - ''Wolinella succinogenes'' 
**[[5k3o]] - WsASP (mutant) + L-Asp 
**[[5k4h]] - WsASP + L-Glu 
**[[5k45]] - WsASP (mutant) + L-Glu 
**[[5dne]], [[5dnd]], [[5dnc]] – ASP (mutant) + asparagine – guinea pig 

*ASP II

**[[1wsa]] – WsASP precursor 
**[[6eok]] - EcASP (mutant) 
**[[1ihd]], [[1jaz]], [[1jja]], [[5mq5]] - EcASP (mutant)

*ASP II complex

**[[3eca]], [[4eca]], [[1nns]] – EcASP + AA 
**[[1ho3]] - EcASP (mutant) + AA 

*Isoaspartyl peptidase/L-asparaginase

**[[4o0c]], [[4zm9]] - hIPA 
**[[4o0d]], [[4o0e]], [[4o0f]], [[4o0g]] - hIPA (mutant) 
**[[4o0h]] - hIPA + L-Asp 
**[[4osx]], [[4osy]] - hIPA + Gly 

*Glycosylasparaginase or N(4)-(β-N-acetylglucosaminyl)-L-asparaginase

**[[9gaa]] - EmGASP – Elizabethkingia meningoseptica 
**[[9gac]], [[9gaf]], [[5v2i]], [[3ljq]] - EmGASP (mutant) 
**[[2gl9]], [[4r4y]] - EmGASP (mutant) + Asn 

*Glutaminase-asparaginase see [[Glutaminase]]

**[[2zak]], [[3c17]] - EcASP precursor (mutant)
}}