Carbon Fixation - Revision history

Alexander Berchansky at 13:03, 6 February 2023

2023-02-06T13:03:30Z

←Older revision		Revision as of 13:03, 6 February 2023
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	'''1) Calvin cycle'''		'''1) Calvin cycle'''
-	*[[Calvin cycle]]	+
		+	[[Calvin cycle]]

	'''2) Reverse Krebs cycle'''		'''2) Reverse Krebs cycle'''

Alexander Berchansky at 11:39, 6 February 2023

2023-02-06T11:39:50Z

←Older revision		Revision as of 11:39, 6 February 2023
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	[[Reductive acetyl CoA pathway]]		[[Reductive acetyl CoA pathway]]
		+
		+	'''4) 3-Hydroxypropionate bicycle'''
		+
		+	[[3-Hydroxypropionate bicycle]]

	</StructureSection>		</StructureSection>
	== References ==		== References ==
	<references/>		<references/>

Alexander Berchansky at 15:48, 26 January 2023

2023-01-26T15:48:09Z

←Older revision		Revision as of 15:48, 26 January 2023
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	[[Reverse Krebs cycle]]		[[Reverse Krebs cycle]]

		+	'''3) Reductive acetyl CoA pathway'''
		+
		+	[[Reductive acetyl CoA pathway]]

	</StructureSection>		</StructureSection>
	== References ==		== References ==
	<references/>		<references/>

Alexander Berchansky at 10:56, 5 January 2023

2023-01-05T10:56:54Z

←Older revision		Revision as of 10:56, 5 January 2023
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	Organisms that grow by fixing carbon are called autotrophs, which include photoautotrophs (which use sunlight), and lithoautotrophs (which use inorganic oxidation).		Organisms that grow by fixing carbon are called autotrophs, which include photoautotrophs (which use sunlight), and lithoautotrophs (which use inorganic oxidation).

-	~~Seven~~ autotrophic carbon fixation pathways are known:	+	Several autotrophic carbon fixation pathways are known:

	'''1) Calvin cycle'''		'''1) Calvin cycle'''

Alexander Berchansky at 10:56, 5 January 2023

2023-01-05T10:56:23Z

←Older revision		Revision as of 10:56, 5 January 2023
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	Seven autotrophic carbon fixation pathways are known:		Seven autotrophic carbon fixation pathways are known:

-	'''Calvin cycle'''	+	'''1) Calvin cycle'''
	*[[Calvin cycle]]		*[[Calvin cycle]]
		+
		+	'''2) Reverse Krebs cycle'''
		+
		+	[[Reverse Krebs cycle]]

Alexander Berchansky at 10:48, 2 January 2023

2023-01-02T10:48:44Z

←Older revision		Revision as of 10:48, 2 January 2023
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	Organisms that grow by fixing carbon are called autotrophs, which include photoautotrophs (which use sunlight), and lithoautotrophs (which use inorganic oxidation).		Organisms that grow by fixing carbon are called autotrophs, which include photoautotrophs (which use sunlight), and lithoautotrophs (which use inorganic oxidation).

-	Seven autotrophic carbon fixation pathways are known.	+	Seven autotrophic carbon fixation pathways are known:

-	'''Calvin cycle''' [~~https://en.wikipedia.org/wiki/Calvin_cycle~~]	+	'''Calvin cycle'''
		+	*[[Calvin cycle]]

-	3 CO<sub>2</sub> + 6 NADPH + 6 H<sup>+</sup> + 9 ATP + 5 H<sub>2</sub>O → glyceraldehyde-3-phosphate (G3P) + 6 NADP<sup>+</sup> + 9 ADP + 8 P<sub>i</sub> (P<sub>i</sub> = inorganic phosphate) (See also [https://en.wikipedia.org/wiki/Calvin_cycle])
-
-	''Step 1''
-
-	The enzyme [[RuBisCO]] catalyses the carboxylation of <scene name='94/942630/Cv/1'>ribulose-1,5-bisphosphate</scene>, RuBP, a 5-carbon compound, by carbon dioxide (a total of 6 carbons) in a two-step reaction. The product of the first step is enediol-enzyme complex that can capture CO2 or O2. Thus, enediol-enzyme complex is the real carboxylase/oxygenase. The CO2 that is captured by enediol in second step produces an unstable six-carbon compound called 2-carboxy 3-keto 1,5-biphosphoribotol (CKABP) (or 3-keto-2-carboxyarabinitol 1,5-bisphosphate) that immediately splits into 2 molecules of <scene name='39/392339/Cv1/6'>3-phosphoglycerate</scene>, a 3-carbon compound.
-	*[[RuBisCO]]
-	*[[Rubisco and Crop Output]]
-	*[[RuBisCO (Hebrew)]]
-
-	''Step 2''
-
-	The enzyme [[Phosphoglycerate Kinase\|phosphoglycerate kinase]] catalyzes the phosphorylation of 3-PGA by ATP (which was produced in the light-dependent stage). <scene name='39/392339/Cv1/5'>1,3-Bisphosphoglycerate</scene> (glycerate-1,3-bisphosphate) and ADP are the products.
-
-	''Step 3''
-
-	The enzyme [[Nathan_Line_sandbox_3\|glyceraldehyde-3-phosphate dehydrogenase]] catalyzes the reduction of <scene name='39/392339/Cv1/5'>1,3-bisphosphoglycerate</scene> by NADPH (which is another product of the light-dependent stage). <scene name='39/392339/Cv1/4'>Glyceraldehyde-3-phosphate</scene> (also called G3P, GP, TP, PGAL, GAP) is produced, and the NADPH itself is oxidized and becomes NADP+. Again, two NADPH are utilized per CO2 fixed. This reaction is reverse to that in the [[glycolysis]].
-
-	'''The next stage in the Calvin cycle is to regenerate RuBP'''. Five G3P molecules produce three RuBP molecules, using up three molecules of ATP. Since each CO2 molecule produces two G3P molecules, three CO2 molecules produce six G3P molecules, of which five are used to regenerate RuBP, leaving a net gain of one G3P molecule per three CO2 molecules (as would be expected from the number of carbon atoms involved).
-
-	The regeneration stage can be broken down into a series of steps:
-
-	1) [[Triose phosphate isomerase]] converts all of the G3P reversibly into <scene name='Triose_Phosphate_Isomerase/Morph/1'>dihydroxyacetone phosphate (DHAP)</scene>, also a 3-carbon molecule.
-
-	2) [[Austin_Drake_Sandbox\|Aldolase]] and [[fructose-1,6-bisphosphatase]] convert a G3P and a DHAP into <scene name='92/925544/Cv/5'>fructose 6-phosphate</scene> (6C). A phosphate ion is lost into solution.
-
-	3)Then fixation of another CO2 generates two more G3P.
-
-	4) <scene name='92/925544/Cv/5'>Fructose 6-phosphate</scene> has two carbons removed by [[transketolase]], giving <scene name='94/942630/Cv/3'>erythrose-4-phosphate (E4P)</scene>. The two carbons on transketolase are added to a <scene name='39/392339/Cv1/4'>Glyceraldehyde-3-phosphate</scene>, giving the ketose <scene name='94/942630/Cv/4'>xylulose-5-phosphate (Xu5P)</scene>.

	</StructureSection>		</StructureSection>
	== References ==		== References ==
	<references/>		<references/>

Alexander Berchansky at 15:02, 1 January 2023

2023-01-01T15:02:57Z

←Older revision		Revision as of 15:02, 1 January 2023
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	3)Then fixation of another CO2 generates two more G3P.		3)Then fixation of another CO2 generates two more G3P.

-	4) <scene name='92/925544/Cv/5'>Fructose 6-phosphate</scene> has two carbons removed by [[transketolase]], giving <scene name='94/942630/Cv/3'>erythrose-4-phosphate (E4P)</scene>. The two carbons on transketolase are added to a <scene name='39/392339/Cv1/4'>Glyceraldehyde-3-phosphate</scene>, giving the ketose xylulose-5-phosphate (Xu5P).	+	4) <scene name='92/925544/Cv/5'>Fructose 6-phosphate</scene> has two carbons removed by [[transketolase]], giving <scene name='94/942630/Cv/3'>erythrose-4-phosphate (E4P)</scene>. The two carbons on transketolase are added to a <scene name='39/392339/Cv1/4'>Glyceraldehyde-3-phosphate</scene>, giving the ketose <scene name='94/942630/Cv/4'>xylulose-5-phosphate (Xu5P)</scene>.

	</StructureSection>		</StructureSection>
	== References ==		== References ==
	<references/>		<references/>

Alexander Berchansky at 15:00, 1 January 2023

2023-01-01T15:00:28Z

←Older revision		Revision as of 15:00, 1 January 2023
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	2) [[Austin_Drake_Sandbox\|Aldolase]] and [[fructose-1,6-bisphosphatase]] convert a G3P and a DHAP into <scene name='92/925544/Cv/5'>fructose 6-phosphate</scene> (6C). A phosphate ion is lost into solution.		2) [[Austin_Drake_Sandbox\|Aldolase]] and [[fructose-1,6-bisphosphatase]] convert a G3P and a DHAP into <scene name='92/925544/Cv/5'>fructose 6-phosphate</scene> (6C). A phosphate ion is lost into solution.
		+
		+	3)Then fixation of another CO2 generates two more G3P.
		+
		+	4) <scene name='92/925544/Cv/5'>Fructose 6-phosphate</scene> has two carbons removed by [[transketolase]], giving <scene name='94/942630/Cv/3'>erythrose-4-phosphate (E4P)</scene>. The two carbons on transketolase are added to a <scene name='39/392339/Cv1/4'>Glyceraldehyde-3-phosphate</scene>, giving the ketose xylulose-5-phosphate (Xu5P).

	</StructureSection>		</StructureSection>
	== References ==		== References ==
	<references/>		<references/>

Alexander Berchansky at 13:28, 1 January 2023

2023-01-01T13:28:05Z

←Older revision		Revision as of 13:28, 1 January 2023
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	''Step 3''		''Step 3''

-	The enzyme [[Nathan_Line_sandbox_3\|glyceraldehyde-3-phosphate dehydrogenase]] catalyzes the reduction of <scene name='39/392339/Cv1/5'>1,3-bisphosphoglycerate</scene> by NADPH (which is another product of the light-dependent stage). <scene name='39/392339/Cv1/4'>Glyceraldehyde-3-phosphate</scene> (also called G3P, GP, TP, PGAL, GAP) is produced, and the NADPH itself is oxidized and becomes NADP+. Again, two NADPH are utilized per CO2 fixed. This reaction is ~~opposite~~ to that in the [[glycolysis]].	+	The enzyme [[Nathan_Line_sandbox_3\|glyceraldehyde-3-phosphate dehydrogenase]] catalyzes the reduction of <scene name='39/392339/Cv1/5'>1,3-bisphosphoglycerate</scene> by NADPH (which is another product of the light-dependent stage). <scene name='39/392339/Cv1/4'>Glyceraldehyde-3-phosphate</scene> (also called G3P, GP, TP, PGAL, GAP) is produced, and the NADPH itself is oxidized and becomes NADP+. Again, two NADPH are utilized per CO2 fixed. This reaction is reverse to that in the [[glycolysis]].

	'''The next stage in the Calvin cycle is to regenerate RuBP'''. Five G3P molecules produce three RuBP molecules, using up three molecules of ATP. Since each CO2 molecule produces two G3P molecules, three CO2 molecules produce six G3P molecules, of which five are used to regenerate RuBP, leaving a net gain of one G3P molecule per three CO2 molecules (as would be expected from the number of carbon atoms involved).		'''The next stage in the Calvin cycle is to regenerate RuBP'''. Five G3P molecules produce three RuBP molecules, using up three molecules of ATP. Since each CO2 molecule produces two G3P molecules, three CO2 molecules produce six G3P molecules, of which five are used to regenerate RuBP, leaving a net gain of one G3P molecule per three CO2 molecules (as would be expected from the number of carbon atoms involved).

Alexander Berchansky at 13:26, 1 January 2023

2023-01-01T13:26:04Z

←Older revision		Revision as of 13:26, 1 January 2023
Line 30:		Line 30:

	1) [[Triose phosphate isomerase]] converts all of the G3P reversibly into <scene name='Triose_Phosphate_Isomerase/Morph/1'>dihydroxyacetone phosphate (DHAP)</scene>, also a 3-carbon molecule.		1) [[Triose phosphate isomerase]] converts all of the G3P reversibly into <scene name='Triose_Phosphate_Isomerase/Morph/1'>dihydroxyacetone phosphate (DHAP)</scene>, also a 3-carbon molecule.
		+
		+	2) [[Austin_Drake_Sandbox\|Aldolase]] and [[fructose-1,6-bisphosphatase]] convert a G3P and a DHAP into <scene name='92/925544/Cv/5'>fructose 6-phosphate</scene> (6C). A phosphate ion is lost into solution.

	</StructureSection>		</StructureSection>
	== References ==		== References ==
	<references/>		<references/>