Glyceraldehyde-3-phosphate dehydrogenase 3D structures - Revision history

Joel L. Sussman at 03:36, 30 May 2022

2022-05-30T03:36:04Z

←Older revision		Revision as of 03:36, 30 May 2022
Line 87:		Line 87:
	**[[6fzi]] - GAPDH + NAD – ''Clostridium perfringens''<br />		**[[6fzi]] - GAPDH + NAD – ''Clostridium perfringens''<br />
	**[[6fzh]], [[6ite]] - GAPDH + NAD – ''Streptococcus pyogenes''<br />		**[[6fzh]], [[6ite]] - GAPDH + NAD – ''Streptococcus pyogenes''<br />
-	**[[~~6dfz~~]] - GAPDH + NAD – ''Acropora millepora''<br />	+	**[[6px2]] - GAPDH + NAD – ''Acropora millepora''<br />
	**[[7jwk]] - GAPDH + NAD – ''Mycoplasma genitalium''<br />		**[[7jwk]] - GAPDH + NAD – ''Mycoplasma genitalium''<br />

Michal Harel at 08:05, 11 August 2021

2021-08-11T08:05:27Z

Michal Harel at 07:33, 11 August 2021

2021-08-11T07:33:45Z

Michal Harel: New page: ==3D structures of glyceraldehyde-3-phosphate dehydrogenase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Apo ...

2019-07-14T10:27:06Z

New page: ==3D structures of glyceraldehyde-3-phosphate dehydrogenase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Apo ...

New page

==3D structures of glyceraldehyde-3-phosphate dehydrogenase==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|

*Apo GAPDH

**[[5c7l]] - hGAPDH – human 
**[[5c7i]] - mGAPDH – mouse 
**[[4gpd]], [[1crw]] – AlGAPDH – American lobster 
**[[2hki]] – sGAPDH – spinach 
**[[3e6a]] – RiGAPDH ligand binding domain – rice 
**[[4iq8]] - GAPDH – yeast 
**[[1vsu]] – CpGAPDH – ''Cryptosporidium parvum'' 
**[[1dc5]], [[1s7c]], [[5o0v]], [[6io4]] - EcGAPDH – ''Escherichia coli'' 
**[[6io4]], [[6io6]], [[6ioj]] - EcGAPDH (mutant) 
**[[1euh]], [[1qi6]] - SmGAPDH – ''Streptococcus mutans'' 
**[[5m6d]] - GAPDH – ''Streptococcus pneumoniae'' 
**[[3lc7]], [[5t73]] - SaGAPDH – ''Staphylococcus aureus'' 
**[[3pqa]] – MjGAPDH – ''Methanocaldococcus jannaschii'' 
**[[3prl]] – BhGAPDH – ''Bacillus halodurans'' 
**[[4dib]] – GAPDH – ''Bacillus anthracis'' 
**[[2gd1]] – GsGAPDH – ''Geobacillus stearothermophilus'' 
**[[1obf]] – GAPDH – ''Achromobacter xylosoxidans'' 
**[[1b7g]] - GAPDH – ''Sulfolobus solfataricus'' 
**[[6iep]] - SagGAPDH – ''Streptococcus agalactiae'' 
**[[5v8y]], [[5v8x]] - SagGAPDH (mutant) 
**[[6iqv]] - LpGAPDH – ''Lactobacillus plantarum'' 

*NAD-dependent GAPDH with cofactor NAD

**[[3gpd]], [[1znq]], [[1u8f]], [[5c7o]], [[4wnc]], [[3pfw]] - hGAPDH + NAD 
**[[4wni]], [[6ade]] - hGAPDH (mutant) + NAD 
**[[5ddi]] - pGAPDH + NAD – pig 
**[[4o63]], [[4o59]] - bGAPDH + NAD – bovine 
**[[1j0x]] - GAPDH + NAD – rabbit 
**[[2vyn]], [[2vyv]] - GAPDH + NAD - rat 
**[[1ihx]] – scsGAPDH + NAD derivative – South China Sea lobster 
**[[1gpd]], [[1szj]], [[1dss]] – AlGAPDH + NAD 
**[[1nbo]] - sGAPDH + NAD 
**[[3pym]] - yGAPDH + NAD 
**[[1vsv]], [[3cps]] – CpGAPDH + NAD 
**[[1gd1]], [[3cmc]] – GsGAPDH + NAD – ''Geobacillus stearothermophilus'' 
**[[1dbv]], [[3dbv]], [[1nq5]], [[1npt]] - GsGAPDH (mutant) + NAD 
**[[1hdg]] - GAPDH + NAD – ''Thermotoga maritima'' 
**[[1gyp]], [[1a7k]] - LmGAPDH + NAD – ''Leishmania mexicana'' 
**[[1gyq]] - LmGAPDH + benzyl-NAD 
**[[1cer]], [[2g82]] - GAPDH + NAD – ''Thermus aquaticus'' 
**[[1gad]], [[1dc6]], [[4mvj]] - EcGAPDH + NAD 
**[[1gae]] - EcGAPDH (mutant) + NAD 
**[[2ep7]] – GAPDH + NAD – ''Aquifex aeolicus'' 
**[[2b4r]], [[1ywg]] - PfGAPDH + NAD – ''Plasmodium falciparum'' 
**[[2b4t]] - PfGAPDH (mutant) + NAD 
**[[2czc]] - GAPDH + NAD – ''Pyrococcus horikoshii'' 
**[[2i5p]] - GAPDH + NAD – ''Kluyveromyces marxianus'' 
**[[3gnq]] - GAPDH + NAD – ''Burkholderia pseudomallei'' 
**[[3hja]] - GAPDH + NAD – ''Borrelia burgdorferi'' 
**[[3e5r]], [[3v1y]] - RiGAPDH + NAD 
**[[2x0n]] – TbGAPDH + NAD – ''Trypanosoma brucei'' – Laue 
**[[4p8r]] - TbGAPDH + NAD 
**[[3k2b]], [[4z0h]], [[3rvd]] - GAPDH + NAD – ''Arabidopsis thaliana'' 
**[[3hq4]], [[3k9q]], [[3ksd]], [[3lc1]], [[3kv3]] - SaGAPDH (mutant) + NAD 
**[[3lvf]], [[3vaz]] - SaGAPDH + NAD 
**[[3sth]] - GAPDH + NAD – ''Toxoplasma gondii'' 
**[[5vmt]] - GAPDH + NAD – ''Neisseria gonorrhoeae'' 
**[[5jy6]], [[5jye]], [[5jyf]], [[4qx6]], [[5y37]] - SagGAPDH + NAD – ''Streptococcus agalactiae'' 
**[[5jya]], [[5utm]], [[5utl]] - SagGAPDH (mutant) + NAD 
**[[4k9d]] - GAPDH + NAD – ''Brugia malayi'' 
**[[4boy]], [[3zcx]], [[3b20]], [[6gfr]] - SeGAPDH + NAD – ''Synechococcus elongatus'' 
**[[3l0d]] - GAPDH + NAD – ''Bartonella henselae'' 
**[[3doc]] - GAPDH + NAD – ''Brucella melitensis'' 
**[[1vc2]] - GAPDH + NAD – ''Thermos thermophilus'' 
**[[5ur0]] - GAPDH + NAD – amoeba 
**[[5ld5]] - GAPDH + NAD – ''Atopobium vaginae'' 
**[[4lsm]] - TcGAPDH + NAD – ''Trypanosoma cruzi'' 
**[[6ok4]] - GAPDH + NAD – ''Chlamydia trachomatis'' 
**[[6nlx]] - GAPDH + NAD – ''Naegleria fowleri'' 
**[[6iqm]] - LpGAPDH + NAD 
**[[6fzi]] - GAPDH + NAD – ''Clostridium perfringens'' 
**[[6fzh]] - GAPDH + NAD – ''Streptococcus pyogenes'' 
**[[6dfz]] - GAPDH + NAD – ''Acropora millepora'' 

*NAD-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)

**[[3cif]] - CpGAPDH (mutant) + NAD + G3P 
**[[3ksz]], [[3l4s]] - SaGAPDH (mutant) + NAD + G3P 
**[[1nqo]], [[1nqa]] - GsGAPDH (mutant) + NAD + G3P 
**[[1dc4]], [[1dc3]] - EcGAPDH + G3P 

*Other NAD-dependent GAPDH ternary complexes

**[[3h9e]] - hGAPDH + NAD + phosphate 
**[[5tso]] - pGAPDH + NAD + phenanthroline 
**[[1ihy]] – scsGAPDH + ADP-ribose 
**[[3dmt]], [[3ids]] - TcGAPDH + NAD + inhibitor 
**[[3k73]], [[3l6o]] - SaGAPDH + NAD + phosphate 
**[[1uxt]] - TtGAPDH (mutant) + NAD + G1P 
**[[3b1j]], [[3b1k]], [[3zdf]], [[6ghr]], [[6ghl]], [[6gg7]], [[6gfq]], [[6gfo]] - SeGAPDH + NAD + CP12 
**[[6gfp]] - SeGAPDH + NAD + NADP 
**[[6gve]] - SeGAPDH + NAD + CP12 + phosphoribulokinase 
**[[3qv1]] - AtGAPDH + NAD + CP12 
**[[1i33]], [[1i32]] - LmGAPDH + inhibitor 
**[[5za0]] – EcGAPDH-A + trehalose 

*NADP-dependent GAPDH

**[[2duu]], [[2d2i]] - SeGAPDH 

*NADP-dependent GAPDH with cofactor NADP

**[[1jn0]], [[1rm4]], [[2pkq]], [[2pkr]] - sGAPDH + NADP 
**[[1rm3]], [[1rm5]] - sGAPDH (mutant) + NADP 
**[[2dbv]], [[4dbv]] - GsGAPDH (mutant) + NADP 
**[[2yyy]] - MjGAPDH + NADP 
**[[2euh]] - SmGAPDH + NADP 
**[[2id2]] - SmGAPDH (mutant) + NADP 
**[[1cf2]] - GAPDH + NADP – ''Methanothermus fervidus'' 
**[[1ky8]], [[1uxn]] - TtGAPDH + NADP – ''Thermoproteus tenax'' 
**[[3rhh]] - BhGAPDH + NADP 

*NADP-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)

**[[1qi1]] - SmGAPDH + NADP + G3P 
**[[2esd]], [[2qe0]] - SmGAPDH (mutant) + NADP + G3P 
**[[3lc2]] – SaGAPDH-thioacyl + G3P 
**[[1uxu]] - TtGAPDH (mutant) + NADP + AMP + G3P 

*Other NADP-dependent GAPDH ternary complexes

**[[1k3t]] - TcGAPDH + coumarin derivative 
**[[1uxv]] - TtGAPDH + NADP + AMP 
**[[1ml3]] - TtGAPDH + NAD + inhibitor 
**[[1uxp]] - TtGAPDH (mutant) + NADP + ADP 
**[[1qxs]] - TtGAPDH + NAD + bisphosphono-glycerate 
**[[1uxq]] - TtGAPDH (mutant) + NADP + G1P 
**[[1uxr]] - TtGAPDH (mutant) + NADP + F6P 
}}

[[Category:Topic Page]]

←Older revision		Revision as of 08:05, 11 August 2021
Line 13:		Line 13:
	**[[4iq8]] - GAPDH – yeast<br />		**[[4iq8]] - GAPDH – yeast<br />
	**[[1vsu]] – CpGAPDH – ''Cryptosporidium parvum''<br />		**[[1vsu]] – CpGAPDH – ''Cryptosporidium parvum''<br />
-	**[[1dc5]], [[1s7c]], [[5o0v~~]], [[6io4~~]], [[6utm]], [[6utn]], [[6uto]] - EcGAPDH – ''Escherichia coli''<br />	+	**[[1dc5]], [[1s7c]], [[5o0v]], [[6utm]], [[6utn]], [[6uto]] - EcGAPDH – ''Escherichia coli''<br />
	**[[6io4]], [[6io6]], [[6ioj]] - EcGAPDH (mutant) <br />		**[[6io4]], [[6io6]], [[6ioj]] - EcGAPDH (mutant) <br />
	**[[1euh]], [[1qi6]] - SmGAPDH – ''Streptococcus mutans''<br />		**[[1euh]], [[1qi6]] - SmGAPDH – ''Streptococcus mutans''<br />
Line 27:		Line 27:
	**[[5v8y]], [[5v8x]] - SagGAPDH (mutant) <br />		**[[5v8y]], [[5v8x]] - SagGAPDH (mutant) <br />
	**[[6iqv]] - LpGAPDH – ''Lactobacillus plantarum''<br />		**[[6iqv]] - LpGAPDH – ''Lactobacillus plantarum''<br />
		+	**[[7d1g]] - GAPDH – ''Clostridium beijerinckii''<br />
		+	**[[7jh0]] - GAPDH – ''Schistosoma mansoni''<br />

	*NAD-dependent GAPDH with cofactor NAD		*NAD-dependent GAPDH with cofactor NAD
Line 32:		Line 34:
	**[[3gpd]], [[1znq]], [[1u8f]], [[5c7o]], [[4wnc]], [[3pfw]] - hGAPDH + NAD <br />		**[[3gpd]], [[1znq]], [[1u8f]], [[5c7o]], [[4wnc]], [[3pfw]] - hGAPDH + NAD <br />
	**[[4wni]], [[6ade]] - hGAPDH (mutant) + NAD<br />		**[[4wni]], [[6ade]] - hGAPDH (mutant) + NAD<br />
		+	**[[6m61]] - hGAPDH + NAD + inhibitor<br />
	**[[5ddi]] - pGAPDH + NAD – pig<br />		**[[5ddi]] - pGAPDH + NAD – pig<br />
	**[[4o63]], [[4o59]] - bGAPDH + NAD – bovine<br />		**[[4o63]], [[4o59]] - bGAPDH + NAD – bovine<br />
	**[[1j0x]] - GAPDH + NAD – rabbit<br />		**[[1j0x]] - GAPDH + NAD – rabbit<br />
	**[[2vyn]], [[2vyv]] - GAPDH + NAD - rat<br />		**[[2vyn]], [[2vyv]] - GAPDH + NAD - rat<br />
		+	**[[6lgj]] - mGAPDH + NAD <br />
		+	**[[6lgk]] - mGAPDH (mutant) + NAD <br />
		+	**[[6lgm]] - mGAPDH + NAD + inhibitor<br />
	**[[1ihx]] – scsGAPDH + NAD derivative – South China Sea lobster<br />		**[[1ihx]] – scsGAPDH + NAD derivative – South China Sea lobster<br />
	**[[1gpd]], [[1szj]], [[1dss]] – AlGAPDH + NAD <br />		**[[1gpd]], [[1szj]], [[1dss]] – AlGAPDH + NAD <br />
Line 50:		Line 56:
	**[[1gyq]] - LmGAPDH + benzyl-NAD<br />		**[[1gyq]] - LmGAPDH + benzyl-NAD<br />
	**[[1cer]], [[2g82]] - GAPDH + NAD – ''Thermus aquaticus''<br />		**[[1cer]], [[2g82]] - GAPDH + NAD – ''Thermus aquaticus''<br />
-	**[[1gad]], [[1dc6]], [[4mvj]] - EcGAPDH + NAD<br />	+	**[[1gad]], [[1dc6]], [[4mvj]], [[7c5f]] - EcGAPDH + NAD<br />
	**[[1gae]] - EcGAPDH (mutant) + NAD<br />		**[[1gae]] - EcGAPDH (mutant) + NAD<br />
	**[[2ep7]] – GAPDH + NAD – ''Aquifex aeolicus''<br />		**[[2ep7]] – GAPDH + NAD – ''Aquifex aeolicus''<br />
Line 76:		Line 82:
	**[[5ld5]] - GAPDH + NAD – ''Atopobium vaginae''<br />		**[[5ld5]] - GAPDH + NAD – ''Atopobium vaginae''<br />
	**[[4lsm]] - TcGAPDH + NAD – ''Trypanosoma cruzi''<br />		**[[4lsm]] - TcGAPDH + NAD – ''Trypanosoma cruzi''<br />
-	**[[6ok4]] - GAPDH + NAD – ''Chlamydia trachomatis''<br />	+	**[[6ok4]], [[6wyc]], [[6x2e]] - GAPDH + NAD – ''Chlamydia trachomatis''<br />
	**[[6nlx]] - GAPDH + NAD – ''Naegleria fowleri''<br />		**[[6nlx]] - GAPDH + NAD – ''Naegleria fowleri''<br />
	**[[6iqm]] - LpGAPDH + NAD<br />		**[[6iqm]] - LpGAPDH + NAD<br />
Line 82:		Line 88:
	**[[6fzh]], [[6ite]] - GAPDH + NAD – ''Streptococcus pyogenes''<br />		**[[6fzh]], [[6ite]] - GAPDH + NAD – ''Streptococcus pyogenes''<br />
	**[[6dfz]] - GAPDH + NAD – ''Acropora millepora''<br />		**[[6dfz]] - GAPDH + NAD – ''Acropora millepora''<br />
		+	**[[7jwk]] - GAPDH + NAD – ''Mycoplasma genitalium''<br />

	*NAD-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)		*NAD-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)
Line 101:		Line 108:
	**[[6gfp]] - SeGAPDH + NAD + NADP <br />		**[[6gfp]] - SeGAPDH + NAD + NADP <br />
	**[[6gve]] - SeGAPDH + NAD + CP12 + phosphoribulokinase<br />		**[[6gve]] - SeGAPDH + NAD + CP12 + phosphoribulokinase<br />
		+	**[[6kev]] - SeGAPDH + ATP + G6P <br />
	**[[3qv1]] - AtGAPDH + NAD + CP12 <br />		**[[3qv1]] - AtGAPDH + NAD + CP12 <br />
	**[[1i33]], [[1i32]] - LmGAPDH + inhibitor<br />		**[[1i33]], [[1i32]] - LmGAPDH + inhibitor<br />

←Older revision		Revision as of 07:33, 11 August 2021
Line 6:		Line 6:
	*Apo GAPDH		*Apo GAPDH

-	**[[5c7l]] - hGAPDH – human<br />	+	**[[5c7l]], [[6iq6]], [[6ynd]], [[6yne]], [[6ynf]], [[6ynh]] - hGAPDH – human<br />
	**[[5c7i]] - mGAPDH – mouse<br />		**[[5c7i]] - mGAPDH – mouse<br />
	**[[4gpd]], [[1crw]] – AlGAPDH – American lobster<br />		**[[4gpd]], [[1crw]] – AlGAPDH – American lobster<br />
Line 13:		Line 13:
	**[[4iq8]] - GAPDH – yeast<br />		**[[4iq8]] - GAPDH – yeast<br />
	**[[1vsu]] – CpGAPDH – ''Cryptosporidium parvum''<br />		**[[1vsu]] – CpGAPDH – ''Cryptosporidium parvum''<br />
-	**[[1dc5]], [[1s7c]], [[5o0v]], [[6io4]] - EcGAPDH – ''Escherichia coli''<br />	+	**[[1dc5]], [[1s7c]], [[5o0v]], [[6io4]], [[6utm]], [[6utn]], [[6uto]] - EcGAPDH – ''Escherichia coli''<br />
	**[[6io4]], [[6io6]], [[6ioj]] - EcGAPDH (mutant) <br />		**[[6io4]], [[6io6]], [[6ioj]] - EcGAPDH (mutant) <br />
	**[[1euh]], [[1qi6]] - SmGAPDH – ''Streptococcus mutans''<br />		**[[1euh]], [[1qi6]] - SmGAPDH – ''Streptococcus mutans''<br />
Line 39:		Line 39:
	**[[1gpd]], [[1szj]], [[1dss]] – AlGAPDH + NAD <br />		**[[1gpd]], [[1szj]], [[1dss]] – AlGAPDH + NAD <br />
	**[[1nbo]] - sGAPDH + NAD<br />		**[[1nbo]] - sGAPDH + NAD<br />
		+	**[[6px2]] - GAPDH + NAD – coral<br />
		+	**[[3k2b]], [[4z0h]], [[3rvd]], [[6qun]], [[6quq]] - AtGAPDH + NAD – ''Arabidopsis thaliana''<br />
		+	**[[6kez]] - AtGAPDH + NAD + phophoribulokinase + CP12-2<br />
	**[[3pym]] - yGAPDH + NAD <br />		**[[3pym]] - yGAPDH + NAD <br />
	**[[1vsv]], [[3cps]] – CpGAPDH + NAD<br />		**[[1vsv]], [[3cps]] – CpGAPDH + NAD<br />
Line 59:		Line 62:
	**[[2x0n]] – TbGAPDH + NAD – ''Trypanosoma brucei'' – Laue<br />		**[[2x0n]] – TbGAPDH + NAD – ''Trypanosoma brucei'' – Laue<br />
	**[[4p8r]] - TbGAPDH + NAD<br />		**[[4p8r]] - TbGAPDH + NAD<br />
-	**[[3k2b]], [[4z0h]], [[3rvd]] - GAPDH + NAD – ''Arabidopsis thaliana''<br />
	**[[3hq4]], [[3k9q]], [[3ksd]], [[3lc1]], [[3kv3]] - SaGAPDH (mutant) + NAD<br />		**[[3hq4]], [[3k9q]], [[3ksd]], [[3lc1]], [[3kv3]] - SaGAPDH (mutant) + NAD<br />
	**[[3lvf]], [[3vaz]] - SaGAPDH + NAD<br />		**[[3lvf]], [[3vaz]] - SaGAPDH + NAD<br />
Line 78:		Line 80:
	**[[6iqm]] - LpGAPDH + NAD<br />		**[[6iqm]] - LpGAPDH + NAD<br />
	**[[6fzi]] - GAPDH + NAD – ''Clostridium perfringens''<br />		**[[6fzi]] - GAPDH + NAD – ''Clostridium perfringens''<br />
-	**[[6fzh]] - GAPDH + NAD – ''Streptococcus pyogenes''<br />	+	**[[6fzh]], [[6ite]] - GAPDH + NAD – ''Streptococcus pyogenes''<br />
	**[[6dfz]] - GAPDH + NAD – ''Acropora millepora''<br />		**[[6dfz]] - GAPDH + NAD – ''Acropora millepora''<br />